miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 3' -62.5 NC_006273.1 + 197275 0.71 0.452544
Target:  5'- cGCGCUGGcGCUggGGCgcgaGUCGG-CGCCc -3'
miRNA:   3'- -CGCGACC-CGGuaCCGg---CGGCCuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 120738 0.73 0.357278
Target:  5'- uUGC-GGGCCAggaugccGGCCGCCaGGGCgGCCa -3'
miRNA:   3'- cGCGaCCCGGUa------CCGGCGG-CCUG-UGG- -5'
30253 3' -62.5 NC_006273.1 + 162917 0.73 0.357278
Target:  5'- cCGUgacGGaCGUGGCCGCCGG-CACCg -3'
miRNA:   3'- cGCGac-CCgGUACCGGCGGCCuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 75260 0.73 0.37215
Target:  5'- aGCGCUGGccGCCGcggcGGCCGCCucAUACCa -3'
miRNA:   3'- -CGCGACC--CGGUa---CCGGCGGccUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 196698 0.72 0.379742
Target:  5'- uGCuGCUGGGCgCGUGGCaggaGCUGG-CGCa -3'
miRNA:   3'- -CG-CGACCCG-GUACCGg---CGGCCuGUGg -5'
30253 3' -62.5 NC_006273.1 + 196819 0.72 0.395235
Target:  5'- gGCGCUGGGCgCGgugcUGcCCGCgCGGugGCUg -3'
miRNA:   3'- -CGCGACCCG-GU----ACcGGCG-GCCugUGG- -5'
30253 3' -62.5 NC_006273.1 + 149732 0.72 0.427416
Target:  5'- uGUcCUGGGCC--GGCUGCCGG-CGCUg -3'
miRNA:   3'- -CGcGACCCGGuaCCGGCGGCCuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 120934 0.71 0.435701
Target:  5'- gGCGCUc-GCCAUGgcgccGCCGCCGGugACg -3'
miRNA:   3'- -CGCGAccCGGUAC-----CGGCGGCCugUGg -5'
30253 3' -62.5 NC_006273.1 + 164570 0.71 0.452544
Target:  5'- aGCGUgccgaaGGCCA-GGCCGCUGG-CGCUg -3'
miRNA:   3'- -CGCGac----CCGGUaCCGGCGGCCuGUGG- -5'
30253 3' -62.5 NC_006273.1 + 189876 0.73 0.35
Target:  5'- cGCGUcGGGC---GGaCCGCCGGGCAUCg -3'
miRNA:   3'- -CGCGaCCCGguaCC-GGCGGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 112962 0.73 0.35
Target:  5'- cGCGCUuugggaGGGCCGcgauCCGCCGGACuCCg -3'
miRNA:   3'- -CGCGA------CCCGGUacc-GGCGGCCUGuGG- -5'
30253 3' -62.5 NC_006273.1 + 2215 0.73 0.342116
Target:  5'- gGCGCUGGGCacgacgcggugaaCGUGGCgCG-UGGAUGCCg -3'
miRNA:   3'- -CGCGACCCG-------------GUACCG-GCgGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 88576 0.8 0.132408
Target:  5'- cGCGCcacagugGcGGCCAUGGgCGCCGGcACGCCu -3'
miRNA:   3'- -CGCGa------C-CCGGUACCgGCGGCC-UGUGG- -5'
30253 3' -62.5 NC_006273.1 + 195939 0.77 0.210323
Target:  5'- aCGCcGGGCCAcggcguccaccgggUagaaccccgcgGGCCGCCGGGCGCCc -3'
miRNA:   3'- cGCGaCCCGGU--------------A-----------CCGGCGGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 147910 0.76 0.242562
Target:  5'- uGCGCU-GGCCucGGCCGUgacuaCGGACGCCg -3'
miRNA:   3'- -CGCGAcCCGGuaCCGGCG-----GCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 95295 0.75 0.25931
Target:  5'- aGCGCUcgGGGUCGacggugGGCCGCCauGACACCu -3'
miRNA:   3'- -CGCGA--CCCGGUa-----CCGGCGGc-CUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 45891 0.74 0.302042
Target:  5'- aGCGCgGcGGCCG-GGCCGCC-GAgGCCg -3'
miRNA:   3'- -CGCGaC-CCGGUaCCGGCGGcCUgUGG- -5'
30253 3' -62.5 NC_006273.1 + 38134 0.74 0.321273
Target:  5'- cGCGCUcGGGCCGgcgaGGCCGaCgCGGuuuauauACACCg -3'
miRNA:   3'- -CGCGA-CCCGGUa---CCGGC-G-GCC-------UGUGG- -5'
30253 3' -62.5 NC_006273.1 + 49949 0.74 0.328114
Target:  5'- aGCGUUcGGGCCA-GGCCacgugcaGCCGGGUGCCg -3'
miRNA:   3'- -CGCGA-CCCGGUaCCGG-------CGGCCUGUGG- -5'
30253 3' -62.5 NC_006273.1 + 94371 0.74 0.328804
Target:  5'- -aGCaccauccgGGGCCGUGG--GCCGGGCACCg -3'
miRNA:   3'- cgCGa-------CCCGGUACCggCGGCCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.