miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 5' -48.4 NC_006273.1 + 83338 0.66 0.999954
Target:  5'- cCgGCgugGUGGGAcccGGCGgcgccguggugggagGACCCGCGg -3'
miRNA:   3'- -GgUGauaUAUCCU---UCGU---------------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 116277 0.66 0.999948
Target:  5'- gCGCaaGUAaAGGAGaauuugcccguGCGGACCCGCGg -3'
miRNA:   3'- gGUGa-UAUaUCCUU-----------CGUUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 48253 0.66 0.999948
Target:  5'- gCACUAgcUAcGGcAGCGacgucgaaGACCCGCGg -3'
miRNA:   3'- gGUGAUauAU-CCuUCGU--------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 31555 0.66 0.999948
Target:  5'- uUACUAUA-GGGAGGaCGAA-CCGCGa -3'
miRNA:   3'- gGUGAUAUaUCCUUC-GUUUgGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 210906 0.66 0.999945
Target:  5'- aCCGCcGUGgagauuuggaagAGG-AGCAAGCCgGCGa -3'
miRNA:   3'- -GGUGaUAUa-----------UCCuUCGUUUGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 163531 0.66 0.999931
Target:  5'- uCCACUGUGguGGuacgcGGCGugacgguCCCGCGUc -3'
miRNA:   3'- -GGUGAUAUauCCu----UCGUuu-----GGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 201556 0.66 0.999931
Target:  5'- cCCGCgggcUGGGccuguGCcAACCCGCGUc -3'
miRNA:   3'- -GGUGauauAUCCuu---CGuUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 181387 0.66 0.999929
Target:  5'- uCCGCUAUGUccgcucguguuccAGGGuugGGCGuACgCCGUGUa -3'
miRNA:   3'- -GGUGAUAUA-------------UCCU---UCGUuUG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 153761 0.66 0.99991
Target:  5'- ---aUAUGUGGGAGcGCAAGgCCGCu- -3'
miRNA:   3'- ggugAUAUAUCCUU-CGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 160894 0.66 0.99991
Target:  5'- gCGCUuccgAGGAGGCgAAGCCgGCa- -3'
miRNA:   3'- gGUGAuauaUCCUUCG-UUUGGgCGca -5'
30253 5' -48.4 NC_006273.1 + 62320 0.66 0.999908
Target:  5'- gCCGCUAacaaguUGGGggGUgcacugcaggcuaAGGCCCGUGc -3'
miRNA:   3'- -GGUGAUau----AUCCuuCG-------------UUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 191471 0.66 0.999908
Target:  5'- -aAUUAUAUAGGugGAGCGGuacgacuGCCgCGCGUa -3'
miRNA:   3'- ggUGAUAUAUCC--UUCGUU-------UGG-GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 226714 0.66 0.999883
Target:  5'- cCCGCUAc--GGGAAcGCcagcGCCUGCGUg -3'
miRNA:   3'- -GGUGAUauaUCCUU-CGuu--UGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 140864 0.66 0.999883
Target:  5'- gCCGCUucucGGGgcGCGAgguGCCCGCc- -3'
miRNA:   3'- -GGUGAuauaUCCuuCGUU---UGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 49445 0.66 0.999883
Target:  5'- -uGCU--GUAGGAAGCGuagcCCCGCu- -3'
miRNA:   3'- ggUGAuaUAUCCUUCGUuu--GGGCGca -5'
30253 5' -48.4 NC_006273.1 + 74829 0.66 0.999849
Target:  5'- aCCGCUcGUAccaGccGCGGGCCCGCGUc -3'
miRNA:   3'- -GGUGA-UAUaucCuuCGUUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 15633 0.66 0.999849
Target:  5'- gCCGCUGgucaucAGGAcgauaCGGGCCCGCGg -3'
miRNA:   3'- -GGUGAUaua---UCCUuc---GUUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 208246 0.67 0.999755
Target:  5'- uCCACUGUcaccgucgcgAUGGGAGGUAGcCCUGUu- -3'
miRNA:   3'- -GGUGAUA----------UAUCCUUCGUUuGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 57020 0.67 0.99973
Target:  5'- -gACUGggacgaggaggAGGAGGCGuccgcGGCCCGCGa -3'
miRNA:   3'- ggUGAUaua--------UCCUUCGU-----UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 67216 0.67 0.99969
Target:  5'- cCCGCUGUucgAGGAccGGCugcuGGCCUacgGCGUg -3'
miRNA:   3'- -GGUGAUAua-UCCU--UCGu---UUGGG---CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.