miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 5' -48.4 NC_006273.1 + 234545 1.1 0.022511
Target:  5'- uCCACUAUAUAGGAAGCAAACCCGCGUc -3'
miRNA:   3'- -GGUGAUAUAUCCUUCGUUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 39653 1.1 0.022511
Target:  5'- uCCACUAUAUAGGAAGCAAACCCGCGUc -3'
miRNA:   3'- -GGUGAUAUAUCCUUCGUUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 125875 0.75 0.935108
Target:  5'- gCCAgcAUGcAGGAGGCAcGCCCGCGc -3'
miRNA:   3'- -GGUgaUAUaUCCUUCGUuUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 86554 0.73 0.967791
Target:  5'- aCCGCUAUAUGGuugcacAGCAAGCCCuGCa- -3'
miRNA:   3'- -GGUGAUAUAUCcu----UCGUUUGGG-CGca -5'
30253 5' -48.4 NC_006273.1 + 209294 0.73 0.97367
Target:  5'- aUACUGUcUAGGGAGCAGcauGCaCCGUGUu -3'
miRNA:   3'- gGUGAUAuAUCCUUCGUU---UG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 160535 0.73 0.975789
Target:  5'- aCCGCUGgugaucgacgAGGAcGCgGAGCCCGCGg -3'
miRNA:   3'- -GGUGAUaua-------UCCUuCG-UUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 211757 0.72 0.98097
Target:  5'- aCGCUAUAaaUGGuGAGCAGGCCCGgGc -3'
miRNA:   3'- gGUGAUAU--AUCcUUCGUUUGGGCgCa -5'
30253 5' -48.4 NC_006273.1 + 11967 0.72 0.986639
Target:  5'- gCGCUAUAUAGGGcaaccgucGCAGACCCaggaaaccGCGUu -3'
miRNA:   3'- gGUGAUAUAUCCUu-------CGUUUGGG--------CGCA- -5'
30253 5' -48.4 NC_006273.1 + 26826 0.71 0.988206
Target:  5'- aCGCg--GUAGGGAGCAAAaCCGgGUa -3'
miRNA:   3'- gGUGauaUAUCCUUCGUUUgGGCgCA- -5'
30253 5' -48.4 NC_006273.1 + 106151 0.71 0.992066
Target:  5'- cCCACUAUG-AGGgcGCAGauACCgggCGCGUg -3'
miRNA:   3'- -GGUGAUAUaUCCuuCGUU--UGG---GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 117698 0.7 0.994026
Target:  5'- cCCAUUAUcccggGUGGGGucGGCGuuacgAGCCCGCGc -3'
miRNA:   3'- -GGUGAUA-----UAUCCU--UCGU-----UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 48248 0.7 0.996781
Target:  5'- uCCGCac----GGAGGCGAGCCCaaGCGUa -3'
miRNA:   3'- -GGUGauauauCCUUCGUUUGGG--CGCA- -5'
30253 5' -48.4 NC_006273.1 + 129728 0.69 0.997273
Target:  5'- uUCACgcgg-AGGAAGCAAGgCCGCc- -3'
miRNA:   3'- -GGUGauauaUCCUUCGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 148033 0.69 0.998071
Target:  5'- -aGCUuc---GGGAGCAGaACCCGCGUc -3'
miRNA:   3'- ggUGAuauauCCUUCGUU-UGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 234300 0.69 0.99839
Target:  5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3'
miRNA:   3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 39407 0.69 0.99839
Target:  5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3'
miRNA:   3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 210821 0.69 0.998663
Target:  5'- aCCACUGgguggGUGacGGggGUuugAAACCCGCu- -3'
miRNA:   3'- -GGUGAUa----UAU--CCuuCG---UUUGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 101702 0.68 0.999093
Target:  5'- aCCGCUGcc-GGGggGCGGgucACCgGCGc -3'
miRNA:   3'- -GGUGAUauaUCCuuCGUU---UGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 92849 0.68 0.999399
Target:  5'- aCCAUcaGUGcAGGAAGCGAgGCCCGUa- -3'
miRNA:   3'- -GGUGa-UAUaUCCUUCGUU-UGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 47555 0.67 0.999515
Target:  5'- cCCGCUAcGUaagaggguugAGGggGCcguuCCCGCGc -3'
miRNA:   3'- -GGUGAUaUA----------UCCuuCGuuu-GGGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.