Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30253 | 5' | -48.4 | NC_006273.1 | + | 94099 | 0.67 | 0.99966 |
Target: 5'- uCCACUGggcggccgcaccUAGGGAGCGcgAGCCC-CGUg -3' miRNA: 3'- -GGUGAUau----------AUCCUUCGU--UUGGGcGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 104813 | 0.67 | 0.999611 |
Target: 5'- gCCGCUcUAUAGGcaaugccaGAGCAAGUgCGCGUu -3' miRNA: 3'- -GGUGAuAUAUCC--------UUCGUUUGgGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 68084 | 0.67 | 0.999611 |
Target: 5'- gCCGCUGUGgccGGAGugcccgucgccGCAAACCC-CGUc -3' miRNA: 3'- -GGUGAUAUau-CCUU-----------CGUUUGGGcGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 98709 | 0.67 | 0.999515 |
Target: 5'- aCCGC-GUAUcuuGGAAgGCGgcuccaaugGACCCGCGUg -3' miRNA: 3'- -GGUGaUAUAu--CCUU-CGU---------UUGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 47555 | 0.67 | 0.999515 |
Target: 5'- cCCGCUAcGUaagaggguugAGGggGCcguuCCCGCGc -3' miRNA: 3'- -GGUGAUaUA----------UCCuuCGuuu-GGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 92849 | 0.68 | 0.999399 |
Target: 5'- aCCAUcaGUGcAGGAAGCGAgGCCCGUa- -3' miRNA: 3'- -GGUGa-UAUaUCCUUCGUU-UGGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 101702 | 0.68 | 0.999093 |
Target: 5'- aCCGCUGcc-GGGggGCGGgucACCgGCGc -3' miRNA: 3'- -GGUGAUauaUCCuuCGUU---UGGgCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 210821 | 0.69 | 0.998663 |
Target: 5'- aCCACUGgguggGUGacGGggGUuugAAACCCGCu- -3' miRNA: 3'- -GGUGAUa----UAU--CCuuCG---UUUGGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 39407 | 0.69 | 0.99839 |
Target: 5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3' miRNA: 3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 234300 | 0.69 | 0.99839 |
Target: 5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3' miRNA: 3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 148033 | 0.69 | 0.998071 |
Target: 5'- -aGCUuc---GGGAGCAGaACCCGCGUc -3' miRNA: 3'- ggUGAuauauCCUUCGUU-UGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 129728 | 0.69 | 0.997273 |
Target: 5'- uUCACgcgg-AGGAAGCAAGgCCGCc- -3' miRNA: 3'- -GGUGauauaUCCUUCGUUUgGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 48248 | 0.7 | 0.996781 |
Target: 5'- uCCGCac----GGAGGCGAGCCCaaGCGUa -3' miRNA: 3'- -GGUGauauauCCUUCGUUUGGG--CGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 117698 | 0.7 | 0.994026 |
Target: 5'- cCCAUUAUcccggGUGGGGucGGCGuuacgAGCCCGCGc -3' miRNA: 3'- -GGUGAUA-----UAUCCU--UCGU-----UUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 106151 | 0.71 | 0.992066 |
Target: 5'- cCCACUAUG-AGGgcGCAGauACCgggCGCGUg -3' miRNA: 3'- -GGUGAUAUaUCCuuCGUU--UGG---GCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 26826 | 0.71 | 0.988206 |
Target: 5'- aCGCg--GUAGGGAGCAAAaCCGgGUa -3' miRNA: 3'- gGUGauaUAUCCUUCGUUUgGGCgCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 11967 | 0.72 | 0.986639 |
Target: 5'- gCGCUAUAUAGGGcaaccgucGCAGACCCaggaaaccGCGUu -3' miRNA: 3'- gGUGAUAUAUCCUu-------CGUUUGGG--------CGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 211757 | 0.72 | 0.98097 |
Target: 5'- aCGCUAUAaaUGGuGAGCAGGCCCGgGc -3' miRNA: 3'- gGUGAUAU--AUCcUUCGUUUGGGCgCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 160535 | 0.73 | 0.975789 |
Target: 5'- aCCGCUGgugaucgacgAGGAcGCgGAGCCCGCGg -3' miRNA: 3'- -GGUGAUaua-------UCCUuCG-UUUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 209294 | 0.73 | 0.97367 |
Target: 5'- aUACUGUcUAGGGAGCAGcauGCaCCGUGUu -3' miRNA: 3'- gGUGAUAuAUCCUUCGUU---UG-GGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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