miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 5' -48.4 NC_006273.1 + 101702 0.68 0.999093
Target:  5'- aCCGCUGcc-GGGggGCGGgucACCgGCGc -3'
miRNA:   3'- -GGUGAUauaUCCuuCGUU---UGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 104813 0.67 0.999611
Target:  5'- gCCGCUcUAUAGGcaaugccaGAGCAAGUgCGCGUu -3'
miRNA:   3'- -GGUGAuAUAUCC--------UUCGUUUGgGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 106151 0.71 0.992066
Target:  5'- cCCACUAUG-AGGgcGCAGauACCgggCGCGUg -3'
miRNA:   3'- -GGUGAUAUaUCCuuCGUU--UGG---GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 116277 0.66 0.999948
Target:  5'- gCGCaaGUAaAGGAGaauuugcccguGCGGACCCGCGg -3'
miRNA:   3'- gGUGa-UAUaUCCUU-----------CGUUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 117698 0.7 0.994026
Target:  5'- cCCAUUAUcccggGUGGGGucGGCGuuacgAGCCCGCGc -3'
miRNA:   3'- -GGUGAUA-----UAUCCU--UCGU-----UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 125875 0.75 0.935108
Target:  5'- gCCAgcAUGcAGGAGGCAcGCCCGCGc -3'
miRNA:   3'- -GGUgaUAUaUCCUUCGUuUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 129728 0.69 0.997273
Target:  5'- uUCACgcgg-AGGAAGCAAGgCCGCc- -3'
miRNA:   3'- -GGUGauauaUCCUUCGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 140864 0.66 0.999883
Target:  5'- gCCGCUucucGGGgcGCGAgguGCCCGCc- -3'
miRNA:   3'- -GGUGAuauaUCCuuCGUU---UGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 148033 0.69 0.998071
Target:  5'- -aGCUuc---GGGAGCAGaACCCGCGUc -3'
miRNA:   3'- ggUGAuauauCCUUCGUU-UGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 153761 0.66 0.99991
Target:  5'- ---aUAUGUGGGAGcGCAAGgCCGCu- -3'
miRNA:   3'- ggugAUAUAUCCUU-CGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 160535 0.73 0.975789
Target:  5'- aCCGCUGgugaucgacgAGGAcGCgGAGCCCGCGg -3'
miRNA:   3'- -GGUGAUaua-------UCCUuCG-UUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 160894 0.66 0.99991
Target:  5'- gCGCUuccgAGGAGGCgAAGCCgGCa- -3'
miRNA:   3'- gGUGAuauaUCCUUCG-UUUGGgCGca -5'
30253 5' -48.4 NC_006273.1 + 163531 0.66 0.999931
Target:  5'- uCCACUGUGguGGuacgcGGCGugacgguCCCGCGUc -3'
miRNA:   3'- -GGUGAUAUauCCu----UCGUuu-----GGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 181387 0.66 0.999929
Target:  5'- uCCGCUAUGUccgcucguguuccAGGGuugGGCGuACgCCGUGUa -3'
miRNA:   3'- -GGUGAUAUA-------------UCCU---UCGUuUG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 191471 0.66 0.999908
Target:  5'- -aAUUAUAUAGGugGAGCGGuacgacuGCCgCGCGUa -3'
miRNA:   3'- ggUGAUAUAUCC--UUCGUU-------UGG-GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 201556 0.66 0.999931
Target:  5'- cCCGCgggcUGGGccuguGCcAACCCGCGUc -3'
miRNA:   3'- -GGUGauauAUCCuu---CGuUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 208246 0.67 0.999755
Target:  5'- uCCACUGUcaccgucgcgAUGGGAGGUAGcCCUGUu- -3'
miRNA:   3'- -GGUGAUA----------UAUCCUUCGUUuGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 209294 0.73 0.97367
Target:  5'- aUACUGUcUAGGGAGCAGcauGCaCCGUGUu -3'
miRNA:   3'- gGUGAUAuAUCCUUCGUU---UG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 210821 0.69 0.998663
Target:  5'- aCCACUGgguggGUGacGGggGUuugAAACCCGCu- -3'
miRNA:   3'- -GGUGAUa----UAU--CCuuCG---UUUGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 210906 0.66 0.999945
Target:  5'- aCCGCcGUGgagauuuggaagAGG-AGCAAGCCgGCGa -3'
miRNA:   3'- -GGUGaUAUa-----------UCCuUCGUUUGGgCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.