miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 5' -48.4 NC_006273.1 + 48253 0.66 0.999948
Target:  5'- gCACUAgcUAcGGcAGCGacgucgaaGACCCGCGg -3'
miRNA:   3'- gGUGAUauAU-CCuUCGU--------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 94099 0.67 0.99966
Target:  5'- uCCACUGggcggccgcaccUAGGGAGCGcgAGCCC-CGUg -3'
miRNA:   3'- -GGUGAUau----------AUCCUUCGU--UUGGGcGCA- -5'
30253 5' -48.4 NC_006273.1 + 74829 0.66 0.999849
Target:  5'- aCCGCUcGUAccaGccGCGGGCCCGCGUc -3'
miRNA:   3'- -GGUGA-UAUaucCuuCGUUUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 49445 0.66 0.999883
Target:  5'- -uGCU--GUAGGAAGCGuagcCCCGCu- -3'
miRNA:   3'- ggUGAuaUAUCCUUCGUuu--GGGCGca -5'
30253 5' -48.4 NC_006273.1 + 140864 0.66 0.999883
Target:  5'- gCCGCUucucGGGgcGCGAgguGCCCGCc- -3'
miRNA:   3'- -GGUGAuauaUCCuuCGUU---UGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 226714 0.66 0.999883
Target:  5'- cCCGCUAc--GGGAAcGCcagcGCCUGCGUg -3'
miRNA:   3'- -GGUGAUauaUCCUU-CGuu--UGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 153761 0.66 0.99991
Target:  5'- ---aUAUGUGGGAGcGCAAGgCCGCu- -3'
miRNA:   3'- ggugAUAUAUCCUU-CGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 160894 0.66 0.99991
Target:  5'- gCGCUuccgAGGAGGCgAAGCCgGCa- -3'
miRNA:   3'- gGUGAuauaUCCUUCG-UUUGGgCGca -5'
30253 5' -48.4 NC_006273.1 + 210906 0.66 0.999945
Target:  5'- aCCGCcGUGgagauuuggaagAGG-AGCAAGCCgGCGa -3'
miRNA:   3'- -GGUGaUAUa-----------UCCuUCGUUUGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 104813 0.67 0.999611
Target:  5'- gCCGCUcUAUAGGcaaugccaGAGCAAGUgCGCGUu -3'
miRNA:   3'- -GGUGAuAUAUCC--------UUCGUUUGgGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 92849 0.68 0.999399
Target:  5'- aCCAUcaGUGcAGGAAGCGAgGCCCGUa- -3'
miRNA:   3'- -GGUGa-UAUaUCCUUCGUU-UGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 101702 0.68 0.999093
Target:  5'- aCCGCUGcc-GGGggGCGGgucACCgGCGc -3'
miRNA:   3'- -GGUGAUauaUCCuuCGUU---UGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 125875 0.75 0.935108
Target:  5'- gCCAgcAUGcAGGAGGCAcGCCCGCGc -3'
miRNA:   3'- -GGUgaUAUaUCCUUCGUuUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 86554 0.73 0.967791
Target:  5'- aCCGCUAUAUGGuugcacAGCAAGCCCuGCa- -3'
miRNA:   3'- -GGUGAUAUAUCcu----UCGUUUGGG-CGca -5'
30253 5' -48.4 NC_006273.1 + 211757 0.72 0.98097
Target:  5'- aCGCUAUAaaUGGuGAGCAGGCCCGgGc -3'
miRNA:   3'- gGUGAUAU--AUCcUUCGUUUGGGCgCa -5'
30253 5' -48.4 NC_006273.1 + 11967 0.72 0.986639
Target:  5'- gCGCUAUAUAGGGcaaccgucGCAGACCCaggaaaccGCGUu -3'
miRNA:   3'- gGUGAUAUAUCCUu-------CGUUUGGG--------CGCA- -5'
30253 5' -48.4 NC_006273.1 + 26826 0.71 0.988206
Target:  5'- aCGCg--GUAGGGAGCAAAaCCGgGUa -3'
miRNA:   3'- gGUGauaUAUCCUUCGUUUgGGCgCA- -5'
30253 5' -48.4 NC_006273.1 + 106151 0.71 0.992066
Target:  5'- cCCACUAUG-AGGgcGCAGauACCgggCGCGUg -3'
miRNA:   3'- -GGUGAUAUaUCCuuCGUU--UGG---GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 117698 0.7 0.994026
Target:  5'- cCCAUUAUcccggGUGGGGucGGCGuuacgAGCCCGCGc -3'
miRNA:   3'- -GGUGAUA-----UAUCCU--UCGU-----UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 234300 0.69 0.99839
Target:  5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3'
miRNA:   3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.