miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30253 5' -48.4 NC_006273.1 + 234300 0.69 0.99839
Target:  5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3'
miRNA:   3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 101702 0.68 0.999093
Target:  5'- aCCGCUGcc-GGGggGCGGgucACCgGCGc -3'
miRNA:   3'- -GGUGAUauaUCCuuCGUU---UGGgCGCa -5'
30253 5' -48.4 NC_006273.1 + 68084 0.67 0.999611
Target:  5'- gCCGCUGUGgccGGAGugcccgucgccGCAAACCC-CGUc -3'
miRNA:   3'- -GGUGAUAUau-CCUU-----------CGUUUGGGcGCA- -5'
30253 5' -48.4 NC_006273.1 + 67216 0.67 0.99969
Target:  5'- cCCGCUGUucgAGGAccGGCugcuGGCCUacgGCGUg -3'
miRNA:   3'- -GGUGAUAua-UCCU--UCGu---UUGGG---CGCA- -5'
30253 5' -48.4 NC_006273.1 + 57020 0.67 0.99973
Target:  5'- -gACUGggacgaggaggAGGAGGCGuccgcGGCCCGCGa -3'
miRNA:   3'- ggUGAUaua--------UCCUUCGU-----UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 208246 0.67 0.999755
Target:  5'- uCCACUGUcaccgucgcgAUGGGAGGUAGcCCUGUu- -3'
miRNA:   3'- -GGUGAUA----------UAUCCUUCGUUuGGGCGca -5'
30253 5' -48.4 NC_006273.1 + 15633 0.66 0.999849
Target:  5'- gCCGCUGgucaucAGGAcgauaCGGGCCCGCGg -3'
miRNA:   3'- -GGUGAUaua---UCCUuc---GUUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 191471 0.66 0.999908
Target:  5'- -aAUUAUAUAGGugGAGCGGuacgacuGCCgCGCGUa -3'
miRNA:   3'- ggUGAUAUAUCC--UUCGUU-------UGG-GCGCA- -5'
30253 5' -48.4 NC_006273.1 + 62320 0.66 0.999908
Target:  5'- gCCGCUAacaaguUGGGggGUgcacugcaggcuaAGGCCCGUGc -3'
miRNA:   3'- -GGUGAUau----AUCCuuCG-------------UUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 181387 0.66 0.999929
Target:  5'- uCCGCUAUGUccgcucguguuccAGGGuugGGCGuACgCCGUGUa -3'
miRNA:   3'- -GGUGAUAUA-------------UCCU---UCGUuUG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 98709 0.67 0.999515
Target:  5'- aCCGC-GUAUcuuGGAAgGCGgcuccaaugGACCCGCGUg -3'
miRNA:   3'- -GGUGaUAUAu--CCUU-CGU---------UUGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 47555 0.67 0.999515
Target:  5'- cCCGCUAcGUaagaggguugAGGggGCcguuCCCGCGc -3'
miRNA:   3'- -GGUGAUaUA----------UCCuuCGuuu-GGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 83338 0.66 0.999954
Target:  5'- cCgGCgugGUGGGAcccGGCGgcgccguggugggagGACCCGCGg -3'
miRNA:   3'- -GgUGauaUAUCCU---UCGU---------------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 209294 0.73 0.97367
Target:  5'- aUACUGUcUAGGGAGCAGcauGCaCCGUGUu -3'
miRNA:   3'- gGUGAUAuAUCCUUCGUU---UG-GGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 160535 0.73 0.975789
Target:  5'- aCCGCUGgugaucgacgAGGAcGCgGAGCCCGCGg -3'
miRNA:   3'- -GGUGAUaua-------UCCUuCG-UUUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 48248 0.7 0.996781
Target:  5'- uCCGCac----GGAGGCGAGCCCaaGCGUa -3'
miRNA:   3'- -GGUGauauauCCUUCGUUUGGG--CGCA- -5'
30253 5' -48.4 NC_006273.1 + 129728 0.69 0.997273
Target:  5'- uUCACgcgg-AGGAAGCAAGgCCGCc- -3'
miRNA:   3'- -GGUGauauaUCCUUCGUUUgGGCGca -5'
30253 5' -48.4 NC_006273.1 + 148033 0.69 0.998071
Target:  5'- -aGCUuc---GGGAGCAGaACCCGCGUc -3'
miRNA:   3'- ggUGAuauauCCUUCGUU-UGGGCGCA- -5'
30253 5' -48.4 NC_006273.1 + 39407 0.69 0.99839
Target:  5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3'
miRNA:   3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5'
30253 5' -48.4 NC_006273.1 + 210821 0.69 0.998663
Target:  5'- aCCACUGgguggGUGacGGggGUuugAAACCCGCu- -3'
miRNA:   3'- -GGUGAUa----UAU--CCuuCG---UUUGGGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.