Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30253 | 5' | -48.4 | NC_006273.1 | + | 39653 | 1.1 | 0.022511 |
Target: 5'- uCCACUAUAUAGGAAGCAAACCCGCGUc -3' miRNA: 3'- -GGUGAUAUAUCCUUCGUUUGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 181387 | 0.66 | 0.999929 |
Target: 5'- uCCGCUAUGUccgcucguguuccAGGGuugGGCGuACgCCGUGUa -3' miRNA: 3'- -GGUGAUAUA-------------UCCU---UCGUuUG-GGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 201556 | 0.66 | 0.999931 |
Target: 5'- cCCGCgggcUGGGccuguGCcAACCCGCGUc -3' miRNA: 3'- -GGUGauauAUCCuu---CGuUUGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 83338 | 0.66 | 0.999954 |
Target: 5'- cCgGCgugGUGGGAcccGGCGgcgccguggugggagGACCCGCGg -3' miRNA: 3'- -GgUGauaUAUCCU---UCGU---------------UUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 129728 | 0.69 | 0.997273 |
Target: 5'- uUCACgcgg-AGGAAGCAAGgCCGCc- -3' miRNA: 3'- -GGUGauauaUCCUUCGUUUgGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 148033 | 0.69 | 0.998071 |
Target: 5'- -aGCUuc---GGGAGCAGaACCCGCGUc -3' miRNA: 3'- ggUGAuauauCCUUCGUU-UGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 210821 | 0.69 | 0.998663 |
Target: 5'- aCCACUGgguggGUGacGGggGUuugAAACCCGCu- -3' miRNA: 3'- -GGUGAUa----UAU--CCuuCG---UUUGGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 47555 | 0.67 | 0.999515 |
Target: 5'- cCCGCUAcGUaagaggguugAGGggGCcguuCCCGCGc -3' miRNA: 3'- -GGUGAUaUA----------UCCuuCGuuu-GGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 67216 | 0.67 | 0.99969 |
Target: 5'- cCCGCUGUucgAGGAccGGCugcuGGCCUacgGCGUg -3' miRNA: 3'- -GGUGAUAua-UCCU--UCGu---UUGGG---CGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 62320 | 0.66 | 0.999908 |
Target: 5'- gCCGCUAacaaguUGGGggGUgcacugcaggcuaAGGCCCGUGc -3' miRNA: 3'- -GGUGAUau----AUCCuuCG-------------UUUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 208246 | 0.67 | 0.999755 |
Target: 5'- uCCACUGUcaccgucgcgAUGGGAGGUAGcCCUGUu- -3' miRNA: 3'- -GGUGAUA----------UAUCCUUCGUUuGGGCGca -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 68084 | 0.67 | 0.999611 |
Target: 5'- gCCGCUGUGgccGGAGugcccgucgccGCAAACCC-CGUc -3' miRNA: 3'- -GGUGAUAUau-CCUU-----------CGUUUGGGcGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 209294 | 0.73 | 0.97367 |
Target: 5'- aUACUGUcUAGGGAGCAGcauGCaCCGUGUu -3' miRNA: 3'- gGUGAUAuAUCCUUCGUU---UG-GGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 15633 | 0.66 | 0.999849 |
Target: 5'- gCCGCUGgucaucAGGAcgauaCGGGCCCGCGg -3' miRNA: 3'- -GGUGAUaua---UCCUuc---GUUUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 160535 | 0.73 | 0.975789 |
Target: 5'- aCCGCUGgugaucgacgAGGAcGCgGAGCCCGCGg -3' miRNA: 3'- -GGUGAUaua-------UCCUuCG-UUUGGGCGCa -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 98709 | 0.67 | 0.999515 |
Target: 5'- aCCGC-GUAUcuuGGAAgGCGgcuccaaugGACCCGCGUg -3' miRNA: 3'- -GGUGaUAUAu--CCUU-CGU---------UUGGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 191471 | 0.66 | 0.999908 |
Target: 5'- -aAUUAUAUAGGugGAGCGGuacgacuGCCgCGCGUa -3' miRNA: 3'- ggUGAUAUAUCC--UUCGUU-------UGG-GCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 163531 | 0.66 | 0.999931 |
Target: 5'- uCCACUGUGguGGuacgcGGCGugacgguCCCGCGUc -3' miRNA: 3'- -GGUGAUAUauCCu----UCGUuu-----GGGCGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 48248 | 0.7 | 0.996781 |
Target: 5'- uCCGCac----GGAGGCGAGCCCaaGCGUa -3' miRNA: 3'- -GGUGauauauCCUUCGUUUGGG--CGCA- -5' |
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30253 | 5' | -48.4 | NC_006273.1 | + | 39407 | 0.69 | 0.99839 |
Target: 5'- gCCGCUAcucGGaGggGCGcccggcGGCCCGCGg -3' miRNA: 3'- -GGUGAUauaUC-CuuCGU------UUGGGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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