miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30254 3' -57 NC_006273.1 + 592 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
30254 3' -57 NC_006273.1 + 996 0.67 0.886695
Target:  5'- uACCUGGggacAGGGACGgggguUGCGCcgggGACGGGGg -3'
miRNA:   3'- uUGGGCC----UCCUUGU-----GCGCG----UUGUCCC- -5'
30254 3' -57 NC_006273.1 + 1126 0.66 0.932797
Target:  5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3'
miRNA:   3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 1725 0.66 0.927809
Target:  5'- cGCUCGGAcgGGAGCuGCGC-CGGCGGuGGg -3'
miRNA:   3'- uUGGGCCU--CCUUG-UGCGcGUUGUC-CC- -5'
30254 3' -57 NC_006273.1 + 1964 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 6782 0.67 0.911507
Target:  5'- gAACCgcaGGAGGAGCugACGCuaCAGgAGGGg -3'
miRNA:   3'- -UUGGg--CCUCCUUG--UGCGc-GUUgUCCC- -5'
30254 3' -57 NC_006273.1 + 8388 0.67 0.90563
Target:  5'- -uUUgGGGGGGACcggcgGCGCGaaaaGACAGGGa -3'
miRNA:   3'- uuGGgCCUCCUUG-----UGCGCg---UUGUCCC- -5'
30254 3' -57 NC_006273.1 + 35490 0.67 0.917163
Target:  5'- --aCCGGcguGGAGCugacauACGCGCAGCAGa- -3'
miRNA:   3'- uugGGCCu--CCUUG------UGCGCGUUGUCcc -5'
30254 3' -57 NC_006273.1 + 35860 0.67 0.899534
Target:  5'- uGCUCGGGGGAGCAuCGUggGCAACAu-- -3'
miRNA:   3'- uUGGGCCUCCUUGU-GCG--CGUUGUccc -5'
30254 3' -57 NC_006273.1 + 39412 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
30254 3' -57 NC_006273.1 + 39863 1.07 0.004868
Target:  5'- gAACCCGGAGGAACACGCGCAACAGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGUGCGCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 40915 0.69 0.827329
Target:  5'- cGGCCCGGuaacGGGAguUACGCugGgGACAGGGa -3'
miRNA:   3'- -UUGGGCCu---CCUU--GUGCG--CgUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 40928 0.66 0.942106
Target:  5'- cGCUCGGGcGGACGCGUGCGGCGu-- -3'
miRNA:   3'- uUGGGCCUcCUUGUGCGCGUUGUccc -5'
30254 3' -57 NC_006273.1 + 41064 0.66 0.932797
Target:  5'- cGugCCGGggacgGGGGACuCuuGCGGCGGGGa -3'
miRNA:   3'- -UugGGCC-----UCCUUGuGcgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 51583 0.68 0.873018
Target:  5'- ---aCGGAGGggUggcgGCG-GCAGCGGGGu -3'
miRNA:   3'- uuggGCCUCCuuG----UGCgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 72188 0.66 0.927298
Target:  5'- gAAUUCGGAGGAACACG-GCAguuagagACuGGa -3'
miRNA:   3'- -UUGGGCCUCCUUGUGCgCGU-------UGuCCc -5'
30254 3' -57 NC_006273.1 + 81969 0.66 0.922597
Target:  5'- cGugCCGGugacGAGCAgCGCGCGGaAGGGa -3'
miRNA:   3'- -UugGGCCuc--CUUGU-GCGCGUUgUCCC- -5'
30254 3' -57 NC_006273.1 + 83469 0.7 0.793478
Target:  5'- uGCCUGGAGGAGCAgauccaGuCGCAGguGGa -3'
miRNA:   3'- uUGGGCCUCCUUGUg-----C-GCGUUguCCc -5'
30254 3' -57 NC_006273.1 + 84408 0.68 0.865875
Target:  5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3'
miRNA:   3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 93919 0.67 0.899534
Target:  5'- gGACCCGGuGc-GCAUGCGCGGgcCAGGa -3'
miRNA:   3'- -UUGGGCCuCcuUGUGCGCGUU--GUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.