miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30254 3' -57 NC_006273.1 + 234755 1.07 0.004868
Target:  5'- gAACCCGGAGGAACACGCGCAACAGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGUGCGCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 234305 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
30254 3' -57 NC_006273.1 + 233685 0.68 0.87996
Target:  5'- cGCCgCGGcGGAuuuccGCGCGgGgGACGGGGu -3'
miRNA:   3'- uUGG-GCCuCCU-----UGUGCgCgUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 230659 0.68 0.86515
Target:  5'- gGACCUGGAGaGAGCAgGCGgAccgagccAgAGGGa -3'
miRNA:   3'- -UUGGGCCUC-CUUGUgCGCgU-------UgUCCC- -5'
30254 3' -57 NC_006273.1 + 228708 0.68 0.873018
Target:  5'- gAACCCGGGuGGGuuguucggaaACG-GCGgGACGGGGa -3'
miRNA:   3'- -UUGGGCCU-CCU----------UGUgCGCgUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 217429 0.72 0.671171
Target:  5'- cAGCgCCGGAGGAucguACugGCGCAgAUAGaGGc -3'
miRNA:   3'- -UUG-GGCCUCCU----UGugCGCGU-UGUC-CC- -5'
30254 3' -57 NC_006273.1 + 215634 0.66 0.937562
Target:  5'- cACCCaGAuaaGGAuguAgAUGCGCAACAGGa -3'
miRNA:   3'- uUGGGcCU---CCU---UgUGCGCGUUGUCCc -5'
30254 3' -57 NC_006273.1 + 213631 0.7 0.775706
Target:  5'- cAACCUGGAGGGAuCGgGCGUccACAGGu -3'
miRNA:   3'- -UUGGGCCUCCUU-GUgCGCGu-UGUCCc -5'
30254 3' -57 NC_006273.1 + 204197 0.73 0.608973
Target:  5'- cAGCCUGGAcgccggccggcaauGGAGCACGCuccgguuacagGCAcuGCAGGGg -3'
miRNA:   3'- -UUGGGCCU--------------CCUUGUGCG-----------CGU--UGUCCC- -5'
30254 3' -57 NC_006273.1 + 203117 0.68 0.865875
Target:  5'- -uCCCGcucgucgcguuGAGGAuaguCGCGCggugGCAGCGGGGg -3'
miRNA:   3'- uuGGGC-----------CUCCUu---GUGCG----CGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 200307 0.7 0.748172
Target:  5'- cACCUGG-GGAACACaCGCGGCAuauuucuuGGGg -3'
miRNA:   3'- uUGGGCCuCCUUGUGcGCGUUGU--------CCC- -5'
30254 3' -57 NC_006273.1 + 198213 0.68 0.858536
Target:  5'- uACCC-GAGGucuuuuGCACGCGCGACuuGGc -3'
miRNA:   3'- uUGGGcCUCCu-----UGUGCGCGUUGucCC- -5'
30254 3' -57 NC_006273.1 + 196856 0.67 0.917163
Target:  5'- uGCgCGGcGGGGC-CG-GCGACGGGGa -3'
miRNA:   3'- uUGgGCCuCCUUGuGCgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 196617 0.66 0.927809
Target:  5'- cGCUCGGAcgGGAGCuGCGC-CGGCGGuGGg -3'
miRNA:   3'- uUGGGCCU--CCUUG-UGCGcGUUGUC-CC- -5'
30254 3' -57 NC_006273.1 + 195485 0.66 0.927809
Target:  5'- cACCUaGGAGGgu-GCGCGCu-CGGGGa -3'
miRNA:   3'- uUGGG-CCUCCuugUGCGCGuuGUCCC- -5'
30254 3' -57 NC_006273.1 + 195020 0.68 0.868756
Target:  5'- aAACCgGGGGcGAGCGCGgcuuugcaaucacgcCGCucGACGGGGa -3'
miRNA:   3'- -UUGGgCCUC-CUUGUGC---------------GCG--UUGUCCC- -5'
30254 3' -57 NC_006273.1 + 191925 0.68 0.865875
Target:  5'- cAACCUGGAGGAGuCGCG-GCAugAcGGc -3'
miRNA:   3'- -UUGGGCCUCCUU-GUGCgCGUugUcCC- -5'
30254 3' -57 NC_006273.1 + 191629 0.69 0.835396
Target:  5'- gAACCgCGcAGGAAcCACGCGgAACAuGGGa -3'
miRNA:   3'- -UUGG-GCcUCCUU-GUGCGCgUUGU-CCC- -5'
30254 3' -57 NC_006273.1 + 189367 0.73 0.60207
Target:  5'- uGCUCGuGAGGcGGCACGCGUGuGCGGGGa -3'
miRNA:   3'- uUGGGC-CUCC-UUGUGCGCGU-UGUCCC- -5'
30254 3' -57 NC_006273.1 + 188607 0.66 0.927809
Target:  5'- uAACgCCGGuuu-GCGCGCGCGGCAGa- -3'
miRNA:   3'- -UUG-GGCCuccuUGUGCGCGUUGUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.