miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30254 3' -57 NC_006273.1 + 172796 0.7 0.766637
Target:  5'- aGACCCGGGuGGAaaaacAUACGUucggGCGACAGGu -3'
miRNA:   3'- -UUGGGCCU-CCU-----UGUGCG----CGUUGUCCc -5'
30254 3' -57 NC_006273.1 + 161839 0.72 0.651463
Target:  5'- cGGCCUcuGGAGGAGCACGUGagucguCGGCgAGGGg -3'
miRNA:   3'- -UUGGG--CCUCCUUGUGCGC------GUUG-UCCC- -5'
30254 3' -57 NC_006273.1 + 156874 0.68 0.865875
Target:  5'- cGCCCGGuguccGGGCG-GCGCcGCAGGGu -3'
miRNA:   3'- uUGGGCCuc---CUUGUgCGCGuUGUCCC- -5'
30254 3' -57 NC_006273.1 + 156270 0.69 0.827329
Target:  5'- aAACCCGGguGGGAGCgACGCcGUcGCuGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUG-UGCG-CGuUGuCCC- -5'
30254 3' -57 NC_006273.1 + 150634 0.7 0.766637
Target:  5'- -uCCCGGAGGGuC-CGCGCAACAc-- -3'
miRNA:   3'- uuGGGCCUCCUuGuGCGCGUUGUccc -5'
30254 3' -57 NC_006273.1 + 149229 0.66 0.942106
Target:  5'- uGCUCGG-GGAAaAgGCGUugGACGGGGa -3'
miRNA:   3'- uUGGGCCuCCUUgUgCGCG--UUGUCCC- -5'
30254 3' -57 NC_006273.1 + 148667 0.74 0.543536
Target:  5'- cGGCCUGGAGGucUGCGCGCAGCugcuGGa -3'
miRNA:   3'- -UUGGGCCUCCuuGUGCGCGUUGu---CCc -5'
30254 3' -57 NC_006273.1 + 147969 0.67 0.90563
Target:  5'- cGCCCgaggcGGAGGAGCcgGCG-GCGGCGGuGGu -3'
miRNA:   3'- uUGGG-----CCUCCUUG--UGCgCGUUGUC-CC- -5'
30254 3' -57 NC_006273.1 + 145685 0.68 0.858536
Target:  5'- -cCUCGGAcgaaggGGAGgACGaUGCGACGGGGa -3'
miRNA:   3'- uuGGGCCU------CCUUgUGC-GCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 145656 0.67 0.911507
Target:  5'- -uUCCGGGGGAAUgaugGgGCGCGGCGGu- -3'
miRNA:   3'- uuGGGCCUCCUUG----UgCGCGUUGUCcc -5'
30254 3' -57 NC_006273.1 + 145309 0.66 0.942106
Target:  5'- cACCUGGuGG-GC-UGCGCcGCGGGGc -3'
miRNA:   3'- uUGGGCCuCCuUGuGCGCGuUGUCCC- -5'
30254 3' -57 NC_006273.1 + 141509 0.67 0.893221
Target:  5'- gGACCUGGAGGuuGACgACGCcGUcuAACAGGu -3'
miRNA:   3'- -UUGGGCCUCC--UUG-UGCG-CG--UUGUCCc -5'
30254 3' -57 NC_006273.1 + 140838 0.66 0.942106
Target:  5'- gAGCCCggGGAGGAGCGgGgUGgGGguGGGa -3'
miRNA:   3'- -UUGGG--CCUCCUUGUgC-GCgUUguCCC- -5'
30254 3' -57 NC_006273.1 + 140618 0.77 0.391417
Target:  5'- aAGCCCGGAGGGGCccaaaaGC-CAGCGGGGc -3'
miRNA:   3'- -UUGGGCCUCCUUGug----CGcGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 136865 0.66 0.932797
Target:  5'- -uCCCGGAGGGgggaagagGCACGaCG-AGCgAGGGc -3'
miRNA:   3'- uuGGGCCUCCU--------UGUGC-GCgUUG-UCCC- -5'
30254 3' -57 NC_006273.1 + 132735 0.67 0.893221
Target:  5'- gAGCgCCGG-GGAG-ACGaCGaCAGCAGGGa -3'
miRNA:   3'- -UUG-GGCCuCCUUgUGC-GC-GUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 122578 0.67 0.917163
Target:  5'- -cUCCGG-GGAcgccagucGCAUGgGCAGCAGGu -3'
miRNA:   3'- uuGGGCCuCCU--------UGUGCgCGUUGUCCc -5'
30254 3' -57 NC_006273.1 + 121470 0.72 0.661328
Target:  5'- gAGCCCaGAGuGGACACacggugaCGCGGCAGGGu -3'
miRNA:   3'- -UUGGGcCUC-CUUGUGc------GCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 117972 0.77 0.407881
Target:  5'- cACCUGGAGGAGC-CGUaGCGGCGGGa -3'
miRNA:   3'- uUGGGCCUCCUUGuGCG-CGUUGUCCc -5'
30254 3' -57 NC_006273.1 + 116484 0.68 0.872313
Target:  5'- uGCCgCGGGacguaguGGAgcacugguuGCACGCGCAGggcCAGGGa -3'
miRNA:   3'- uUGG-GCCU-------CCU---------UGUGCGCGUU---GUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.