miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30254 3' -57 NC_006273.1 + 132735 0.67 0.893221
Target:  5'- gAGCgCCGG-GGAG-ACGaCGaCAGCAGGGa -3'
miRNA:   3'- -UUG-GGCCuCCUUgUGC-GC-GUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 230659 0.68 0.86515
Target:  5'- gGACCUGGAGaGAGCAgGCGgAccgagccAgAGGGa -3'
miRNA:   3'- -UUGGGCCUC-CUUGUgCGCgU-------UgUCCC- -5'
30254 3' -57 NC_006273.1 + 84408 0.68 0.865875
Target:  5'- uACCCuGGGccauaGAACACaCGCGAUAGGGg -3'
miRNA:   3'- uUGGGcCUC-----CUUGUGcGCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 191925 0.68 0.865875
Target:  5'- cAACCUGGAGGAGuCGCG-GCAugAcGGc -3'
miRNA:   3'- -UUGGGCCUCCUU-GUGCgCGUugUcCC- -5'
30254 3' -57 NC_006273.1 + 116484 0.68 0.872313
Target:  5'- uGCCgCGGGacguaguGGAgcacugguuGCACGCGCAGggcCAGGGa -3'
miRNA:   3'- uUGG-GCCU-------CCU---------UGUGCGCGUU---GUCCC- -5'
30254 3' -57 NC_006273.1 + 51583 0.68 0.873018
Target:  5'- ---aCGGAGGggUggcgGCG-GCAGCGGGGu -3'
miRNA:   3'- uuggGCCUCCuuG----UGCgCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 996 0.67 0.886695
Target:  5'- uACCUGGggacAGGGACGgggguUGCGCcgggGACGGGGg -3'
miRNA:   3'- uUGGGCC----UCCUUGU-----GCGCG----UUGUCCC- -5'
30254 3' -57 NC_006273.1 + 113246 0.67 0.886695
Target:  5'- gGACgauaaCGGAGGAGCugGUGCAAgAGc- -3'
miRNA:   3'- -UUGg----GCCUCCUUGugCGCGUUgUCcc -5'
30254 3' -57 NC_006273.1 + 141509 0.67 0.893221
Target:  5'- gGACCUGGAGGuuGACgACGCcGUcuAACAGGu -3'
miRNA:   3'- -UUGGGCCUCC--UUG-UGCG-CG--UUGUCCc -5'
30254 3' -57 NC_006273.1 + 145685 0.68 0.858536
Target:  5'- -cCUCGGAcgaaggGGAGgACGaUGCGACGGGGa -3'
miRNA:   3'- uuGGGCCU------CCUUgUGC-GCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 191629 0.69 0.835396
Target:  5'- gAACCgCGcAGGAAcCACGCGgAACAuGGGa -3'
miRNA:   3'- -UUGG-GCcUCCUU-GUGCGCgUUGU-CCC- -5'
30254 3' -57 NC_006273.1 + 94918 0.69 0.827329
Target:  5'- gGGCCCGGucAGGAGCuuCGgG-AGCGGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUGu-GCgCgUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 113522 0.77 0.394675
Target:  5'- uGCCCGGGGGGcGCGCGgGCGgcgaagagaagggcuACGGGGg -3'
miRNA:   3'- uUGGGCCUCCU-UGUGCgCGU---------------UGUCCC- -5'
30254 3' -57 NC_006273.1 + 112216 0.74 0.572626
Target:  5'- --gCUGGAGGAcgcggcggugGCaAUGCGCGGCGGGGg -3'
miRNA:   3'- uugGGCCUCCU----------UG-UGCGCGUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 94516 0.73 0.592226
Target:  5'- cGGCCCGGGGGGAC-C-CG-AGCGGGGg -3'
miRNA:   3'- -UUGGGCCUCCUUGuGcGCgUUGUCCC- -5'
30254 3' -57 NC_006273.1 + 204197 0.73 0.608973
Target:  5'- cAGCCUGGAcgccggccggcaauGGAGCACGCuccgguuacagGCAcuGCAGGGg -3'
miRNA:   3'- -UUGGGCCU--------------CCUUGUGCG-----------CGU--UGUCCC- -5'
30254 3' -57 NC_006273.1 + 217429 0.72 0.671171
Target:  5'- cAGCgCCGGAGGAucguACugGCGCAgAUAGaGGc -3'
miRNA:   3'- -UUG-GGCCUCCU----UGugCGCGU-UGUC-CC- -5'
30254 3' -57 NC_006273.1 + 234305 0.71 0.729326
Target:  5'- uACUCGGAGGGGCGCcCGgCGgcccGCGGGGu -3'
miRNA:   3'- uUGGGCCUCCUUGUGcGC-GU----UGUCCC- -5'
30254 3' -57 NC_006273.1 + 200307 0.7 0.748172
Target:  5'- cACCUGG-GGAACACaCGCGGCAuauuucuuGGGg -3'
miRNA:   3'- uUGGGCCuCCUUGUGcGCGUUGU--------CCC- -5'
30254 3' -57 NC_006273.1 + 156270 0.69 0.827329
Target:  5'- aAACCCGGguGGGAGCgACGCcGUcGCuGGGu -3'
miRNA:   3'- -UUGGGCC--UCCUUG-UGCG-CGuUGuCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.