miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3026 5' -53.6 NC_001493.1 + 57419 0.66 0.966545
Target:  5'- -cAGCGCCCU-UCGuu--UCCGGGCa -3'
miRNA:   3'- cuUUGCGGGAgAGCuacuAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 131264 0.66 0.96557
Target:  5'- ----aGCuCUUCUCGGUGAgcgcaucgagacccUCCGGGCc -3'
miRNA:   3'- cuuugCG-GGAGAGCUACU--------------AGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 15214 0.66 0.96322
Target:  5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3'
miRNA:   3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 130768 0.66 0.96322
Target:  5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3'
miRNA:   3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 72560 0.66 0.96322
Target:  5'- gGGuuCGUUUgCUCGAUGAaaucUCCGGACa -3'
miRNA:   3'- -CUuuGCGGGaGAGCUACU----AGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 109257 0.66 0.959672
Target:  5'- ----gGCCCUgaCGAUGuaCCGGGCGc -3'
miRNA:   3'- cuuugCGGGAgaGCUACuaGGCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 84689 0.66 0.959672
Target:  5'- uGGGCGCCCUCagaUCGgcGAcgCUGGAgGg -3'
miRNA:   3'- cUUUGCGGGAG---AGCuaCUa-GGCCUgC- -5'
3026 5' -53.6 NC_001493.1 + 57275 0.66 0.959672
Target:  5'- uGAGAacaggaGUCCUCUcacugaggCGAUGAUgcCCGGACa -3'
miRNA:   3'- -CUUUg-----CGGGAGA--------GCUACUA--GGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 42152 0.66 0.959305
Target:  5'- cGAGugGUcacggugUCUCUCGggGAUC-GGACGg -3'
miRNA:   3'- -CUUugCG-------GGAGAGCuaCUAGgCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 23362 0.66 0.955896
Target:  5'- --cGCuCCCUCUUGAUGucUUCGGugGc -3'
miRNA:   3'- cuuUGcGGGAGAGCUACu-AGGCCugC- -5'
3026 5' -53.6 NC_001493.1 + 70690 0.67 0.938418
Target:  5'- cGAcACGCCa--UCGGgugUGAUCaCGGACGg -3'
miRNA:   3'- -CUuUGCGGgagAGCU---ACUAG-GCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 114781 0.67 0.938418
Target:  5'- --cACGCUCg-UCGAUGAuuUCCuGGACGa -3'
miRNA:   3'- cuuUGCGGGagAGCUACU--AGG-CCUGC- -5'
3026 5' -53.6 NC_001493.1 + 110498 0.67 0.938417
Target:  5'- --cGCGCCCggagugaaaCUCGAUGGgccgCCGcGACa -3'
miRNA:   3'- cuuUGCGGGa--------GAGCUACUa---GGC-CUGc -5'
3026 5' -53.6 NC_001493.1 + 64766 0.68 0.917029
Target:  5'- aGGGuCGCCCUCUgGAcGAUCaCGcGGCGc -3'
miRNA:   3'- -CUUuGCGGGAGAgCUaCUAG-GC-CUGC- -5'
3026 5' -53.6 NC_001493.1 + 29127 0.68 0.911066
Target:  5'- --cGCGUCCUUUU--UGGUCCGGGCc -3'
miRNA:   3'- cuuUGCGGGAGAGcuACUAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 57626 0.68 0.904858
Target:  5'- -cAACGCCCcCUCGAuacUGAaCCGGGUGa -3'
miRNA:   3'- cuUUGCGGGaGAGCU---ACUaGGCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 90831 0.69 0.862657
Target:  5'- cGAACGgCCUCUCGAcucgGAgCCGG-CGg -3'
miRNA:   3'- cUUUGCgGGAGAGCUa---CUaGGCCuGC- -5'
3026 5' -53.6 NC_001493.1 + 85946 0.72 0.715105
Target:  5'- gGAGACGCaCCggaucucaacaUCGAUGAgcucCCGGACGg -3'
miRNA:   3'- -CUUUGCG-GGag---------AGCUACUa---GGCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 83523 0.75 0.572554
Target:  5'- ---cUGCCUgaaCGAUGAUCCGGACGa -3'
miRNA:   3'- cuuuGCGGGagaGCUACUAGGCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 128612 0.75 0.552103
Target:  5'- cGggGuCGCCCUCUgGGUGAUCgUGGcACGg -3'
miRNA:   3'- -CuuU-GCGGGAGAgCUACUAG-GCC-UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.