miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3026 5' -53.6 NC_001493.1 + 84689 0.66 0.959672
Target:  5'- uGGGCGCCCUCagaUCGgcGAcgCUGGAgGg -3'
miRNA:   3'- cUUUGCGGGAG---AGCuaCUa-GGCCUgC- -5'
3026 5' -53.6 NC_001493.1 + 57275 0.66 0.959672
Target:  5'- uGAGAacaggaGUCCUCUcacugaggCGAUGAUgcCCGGACa -3'
miRNA:   3'- -CUUUg-----CGGGAGA--------GCUACUA--GGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 109257 0.66 0.959672
Target:  5'- ----gGCCCUgaCGAUGuaCCGGGCGc -3'
miRNA:   3'- cuuugCGGGAgaGCUACuaGGCCUGC- -5'
3026 5' -53.6 NC_001493.1 + 130768 0.66 0.96322
Target:  5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3'
miRNA:   3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 15214 0.66 0.96322
Target:  5'- -uAACGCaCCacgagCUCGuagagGGUCCGGACc -3'
miRNA:   3'- cuUUGCG-GGa----GAGCua---CUAGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 72560 0.66 0.96322
Target:  5'- gGGuuCGUUUgCUCGAUGAaaucUCCGGACa -3'
miRNA:   3'- -CUuuGCGGGaGAGCUACU----AGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 131264 0.66 0.96557
Target:  5'- ----aGCuCUUCUCGGUGAgcgcaucgagacccUCCGGGCc -3'
miRNA:   3'- cuuugCG-GGAGAGCUACU--------------AGGCCUGc -5'
3026 5' -53.6 NC_001493.1 + 57419 0.66 0.966545
Target:  5'- -cAGCGCCCU-UCGuu--UCCGGGCa -3'
miRNA:   3'- cuUUGCGGGAgAGCuacuAGGCCUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.