miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30265 3' -60.3 NC_006294.1 + 612 0.67 0.063101
Target:  5'- uGGAGCAGUGCGAAaUGCU--CCCUCa -3'
miRNA:   3'- -CCUCGUCGCGUUUcGCGGcuGGGGGc -5'
30265 3' -60.3 NC_006294.1 + 6216 0.66 0.076721
Target:  5'- gGGGGuCGGCGCuuuGCGCUG-CUCCgCGu -3'
miRNA:   3'- -CCUC-GUCGCGuuuCGCGGCuGGGG-GC- -5'
30265 3' -60.3 NC_006294.1 + 6185 1.1 1.2e-05
Target:  5'- cGGAGCAGCGCAAAGCGCCGACCCCCGc -3'
miRNA:   3'- -CCUCGUCGCGUUUCGCGGCUGGGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.