miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30266 3' -52.3 NC_006296.2 + 12705 1.13 0.000182
Target:  5'- cCGGCACCUCUAAGCCAUAUAUGGGCCu -3'
miRNA:   3'- -GCCGUGGAGAUUCGGUAUAUACCCGG- -5'
30266 3' -52.3 NC_006296.2 + 5006 0.68 0.37101
Target:  5'- uGcGCugCUCUGGGUgGUGggcccGGGCCc -3'
miRNA:   3'- gC-CGugGAGAUUCGgUAUaua--CCCGG- -5'
30266 3' -52.3 NC_006296.2 + 12328 0.66 0.513568
Target:  5'- uGGaauaaACCUCUGAGCaucggguugGGGCUg -3'
miRNA:   3'- gCCg----UGGAGAUUCGguauaua--CCCGG- -5'
30266 3' -52.3 NC_006296.2 + 12616 0.77 0.096883
Target:  5'- uGGCuagGgCUCUGagaAGCCAcAUGUGGGCCa -3'
miRNA:   3'- gCCG---UgGAGAU---UCGGUaUAUACCCGG- -5'
30266 3' -52.3 NC_006296.2 + 5996 0.68 0.37101
Target:  5'- uGGUACCUgcaaUGGGCCAauUAUcgugugauaucGUGGGUCa -3'
miRNA:   3'- gCCGUGGAg---AUUCGGU--AUA-----------UACCCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.