Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 2458 | 1.12 | 0.000337 |
|
Target: 5'- gGAGAGGCCAACUGCAUCAGAGAAACCc -3' miRNA: 3'- -CUCUCCGGUUGACGUAGUCUCUUUGG- -5' |
|||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 2593 | 0.7 | 0.370388 |
|
Target: 5'- --aGGGCCAAaUGCAUCugcGGAGAAugCc -3' miRNA: 3'- cucUCCGGUUgACGUAG---UCUCUUugG- -5' |
|||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 14283 | 0.67 | 0.526329 |
|
Target: 5'- -uGAGGCUcuAACUGUAaCAGAuccgcaGAAACCc -3' miRNA: 3'- cuCUCCGG--UUGACGUaGUCU------CUUUGG- -5' |
|||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 350 | 0.67 | 0.526329 |
|
Target: 5'- cGAGucaccAGGCCAACUuauUCAGAGAAucACUg -3' miRNA: 3'- -CUC-----UCCGGUUGAcguAGUCUCUU--UGG- -5' |
|||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 7975 | 0.66 | 0.563116 |
|
Target: 5'- aGGAGGCCAACauaguaugGCAaCAG-GAuuACCg -3' miRNA: 3'- cUCUCCGGUUGa-------CGUaGUCuCUu-UGG- -5' |
|||||||
| 30268 | 3' | -50.5 | NC_006296.2 | + | 4705 | 0.66 | 0.57554 |
|
Target: 5'- cGGGccuuGGUCGGCUGCggCGGugggcGGAGCCg -3' miRNA: 3'- -CUCu---CCGGUUGACGuaGUCu----CUUUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home