miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30269 3' -65.2 NC_006296.2 + 5241 0.66 0.081133
Target:  5'- cACCCCCGCAccccaacacaGCGGaCCCUggUCACCCa -3'
miRNA:   3'- cUGGGGGUGUcg--------CGUC-GGGG--GGUGGG- -5'
30269 3' -65.2 NC_006296.2 + 4649 0.67 0.067892
Target:  5'- -cUCCCCACGGCuCcGCCCaCCGCCg -3'
miRNA:   3'- cuGGGGGUGUCGcGuCGGGgGGUGGg -5'
30269 3' -65.2 NC_006296.2 + 4611 0.68 0.058471
Target:  5'- cGCaCCCCACcuGCcCuGCaCCCCCACCUg -3'
miRNA:   3'- cUG-GGGGUGu-CGcGuCG-GGGGGUGGG- -5'
30269 3' -65.2 NC_006296.2 + 5193 0.68 0.062077
Target:  5'- aGGgCCCCACuccccCGCccCCCUCCGCCCg -3'
miRNA:   3'- -CUgGGGGUGuc---GCGucGGGGGGUGGG- -5'
30269 3' -65.2 NC_006296.2 + 5337 0.69 0.053439
Target:  5'- aGAUCUCCcCAGCcggGCAGCCCaaggCCACCa -3'
miRNA:   3'- -CUGGGGGuGUCG---CGUCGGGg---GGUGGg -5'
30269 3' -65.2 NC_006296.2 + 4945 0.74 0.019633
Target:  5'- aACCaCCCGCAGgGCccagggcccgGGCCCaCCACCCa -3'
miRNA:   3'- cUGG-GGGUGUCgCG----------UCGGGgGGUGGG- -5'
30269 3' -65.2 NC_006296.2 + 5108 0.76 0.012026
Target:  5'- aGAUCCCCaACAGCaGCA-CCCCCCACgCa -3'
miRNA:   3'- -CUGGGGG-UGUCG-CGUcGGGGGGUGgG- -5'
30269 3' -65.2 NC_006296.2 + 5009 0.79 0.006917
Target:  5'- cGCCCCacgCACAGCaGCAGagcaccuccagaCCCCCCACCCa -3'
miRNA:   3'- cUGGGG---GUGUCG-CGUC------------GGGGGGUGGG- -5'
30269 3' -65.2 NC_006296.2 + 4545 1.09 0.000015
Target:  5'- aGACCCCCACAGCGCAGCCCCCCACCCc -3'
miRNA:   3'- -CUGGGGGUGUCGCGUCGGGGGGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.