miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30269 5' -59.9 NC_006296.2 + 8186 0.67 0.129557
Target:  5'- -uGCgACGGGGCugUCAGCUaggcagaGGGCAg -3'
miRNA:   3'- ugUG-UGCCUCGugGGUCGAga-----CCCGU- -5'
30269 5' -59.9 NC_006296.2 + 4579 1.08 0.000058
Target:  5'- aACACACGGAGCACCCAGCUCUGGGCAg -3'
miRNA:   3'- -UGUGUGCCUCGUGGGUCGAGACCCGU- -5'
30269 5' -59.9 NC_006296.2 + 5297 0.69 0.104801
Target:  5'- cCAgGCGGAGCACCaagggcaAGCcaCUGGGUc -3'
miRNA:   3'- uGUgUGCCUCGUGGg------UCGa-GACCCGu -5'
30269 5' -59.9 NC_006296.2 + 13066 0.67 0.133107
Target:  5'- aGCACAuagacucagggauCGGAGUACCCAaguuaaguaCUCUGGGaCAu -3'
miRNA:   3'- -UGUGU-------------GCCUCGUGGGUc--------GAGACCC-GU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.