miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30273 5' -51.2 NC_006296.2 + 12661 1.09 0.000341
Target:  5'- gAAGGCCCAUAUAUGGCUUAGAGGUGCc -3'
miRNA:   3'- -UUCCGGGUAUAUACCGAAUCUCCACG- -5'
30273 5' -51.2 NC_006296.2 + 5088 0.72 0.225156
Target:  5'- -cGGUCCGgcgucgggGUGGCUcuggguggggggucUGGAGGUGCu -3'
miRNA:   3'- uuCCGGGUaua-----UACCGA--------------AUCUCCACG- -5'
30273 5' -51.2 NC_006296.2 + 5216 0.69 0.332197
Target:  5'- uGGGGCCCucUGUucccaucuggcGUGGUgUGGAGGUGg -3'
miRNA:   3'- -UUCCGGGu-AUA-----------UACCGaAUCUCCACg -5'
30273 5' -51.2 NC_006296.2 + 5179 0.68 0.381118
Target:  5'- gGAGuCCCGggggcgGUGGUgggGGGGGUGCg -3'
miRNA:   3'- -UUCcGGGUaua---UACCGaa-UCUCCACG- -5'
30273 5' -51.2 NC_006296.2 + 4667 0.68 0.391463
Target:  5'- gGAGGUCCGgaccaGGU--GGGGGUGCa -3'
miRNA:   3'- -UUCCGGGUauauaCCGaaUCUCCACG- -5'
30273 5' -51.2 NC_006296.2 + 12663 0.67 0.43462
Target:  5'- -uGGCCCAcAUGUGGCUUcucAGAGcccuaGCc -3'
miRNA:   3'- uuCCGGGUaUAUACCGAA---UCUCca---CG- -5'
30273 5' -51.2 NC_006296.2 + 5347 0.66 0.49222
Target:  5'- cGGGaCCCA---GUGGCUUGcccuuGGUGCu -3'
miRNA:   3'- uUCC-GGGUauaUACCGAAUcu---CCACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.