miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30287 3' -54.5 NC_006324.1 + 6908 0.68 0.472628
Target:  5'- cCAAAGCa-UCcGUgGGGGACGCUGCu -3'
miRNA:   3'- cGUUUCGgcAGuCA-CUCCUGCGACGc -5'
30287 3' -54.5 NC_006324.1 + 8334 0.67 0.560031
Target:  5'- uGCGAGGgCGUUucGUgGAGuGAcCGCUGCGg -3'
miRNA:   3'- -CGUUUCgGCAGu-CA-CUC-CU-GCGACGC- -5'
30287 3' -54.5 NC_006324.1 + 14765 0.68 0.480019
Target:  5'- aCAGGGCCGUC-GUGGGGaagcaggaaagggcGCGUUGUc -3'
miRNA:   3'- cGUUUCGGCAGuCACUCC--------------UGCGACGc -5'
30287 3' -54.5 NC_006324.1 + 22159 1.11 0.000493
Target:  5'- cGCAAAGCCGUCAGUGAGGACGCUGCGc -3'
miRNA:   3'- -CGUUUCGGCAGUCACUCCUGCGACGC- -5'
30287 3' -54.5 NC_006324.1 + 24612 0.71 0.327773
Target:  5'- aGCAGAGCCGUaauuaugugauguuuGUGGGGACGCcaCGa -3'
miRNA:   3'- -CGUUUCGGCAgu-------------CACUCCUGCGacGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.