miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30288 5' -47.1 NC_006324.1 + 6177 0.72 0.701983
Target:  5'- gGCAUAAGUUcaGCACUuaagUUGUCGGUUUCa -3'
miRNA:   3'- aCGUGUUUAA--CGUGA----AGCGGCUAAGG- -5'
30288 5' -47.1 NC_006324.1 + 9348 0.68 0.910992
Target:  5'- aUGCGCAGAcgGCGCcgaagacaGCCGccUCCa -3'
miRNA:   3'- -ACGUGUUUaaCGUGaag-----CGGCuaAGG- -5'
30288 5' -47.1 NC_006324.1 + 9484 0.7 0.824431
Target:  5'- uUGCGCAGgaacuuGUUGCagccucauuGCUUCGCUGAUaUCg -3'
miRNA:   3'- -ACGUGUU------UAACG---------UGAAGCGGCUAaGG- -5'
30288 5' -47.1 NC_006324.1 + 16255 0.7 0.793181
Target:  5'- cGCGCGAAgacggGCGCUaggCGCCGcauauugcUUCCg -3'
miRNA:   3'- aCGUGUUUaa---CGUGAa--GCGGCu-------AAGG- -5'
30288 5' -47.1 NC_006324.1 + 17523 0.68 0.888223
Target:  5'- cGUACA---UGCACaUCGCCGGgcaggaugCCu -3'
miRNA:   3'- aCGUGUuuaACGUGaAGCGGCUaa------GG- -5'
30288 5' -47.1 NC_006324.1 + 21751 0.66 0.961401
Target:  5'- uUGCugGAuuucauucUGCGCggCGCCGAUa-- -3'
miRNA:   3'- -ACGugUUua------ACGUGaaGCGGCUAagg -5'
30288 5' -47.1 NC_006324.1 + 25574 1.14 0.001829
Target:  5'- gUGCACAAAUUGCACUUCGCCGAUUCCu -3'
miRNA:   3'- -ACGUGUUUAACGUGAAGCGGCUAAGG- -5'
30288 5' -47.1 NC_006324.1 + 25948 0.66 0.965389
Target:  5'- aGCAUcug--GCGC-UCGCCGAUgcUCUc -3'
miRNA:   3'- aCGUGuuuaaCGUGaAGCGGCUA--AGG- -5'
30288 5' -47.1 NC_006324.1 + 32384 0.67 0.930781
Target:  5'- aUGCGCcaagUGCACUaCGuuGGUUUUg -3'
miRNA:   3'- -ACGUGuuuaACGUGAaGCggCUAAGG- -5'
30288 5' -47.1 NC_006324.1 + 33313 0.66 0.961401
Target:  5'- gGCugGAuaugauuugUGCGCUUCGCauuacguugaGAUUCa -3'
miRNA:   3'- aCGugUUua-------ACGUGAAGCGg---------CUAAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.