miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30289 3' -49.5 NC_006324.1 + 522 0.66 0.860527
Target:  5'- gGGAGGGGCGggGAGUGUccgugugcgugcGA-GCGGCGg- -3'
miRNA:   3'- -CCUUUCCGU--UUCAUA------------CUcCGCCGUaa -5'
30289 3' -49.5 NC_006324.1 + 103 0.66 0.860527
Target:  5'- gGGAGGGGCGggGAGUGUccgugugcgugcGA-GCGGCGg- -3'
miRNA:   3'- -CCUUUCCGU--UUCAUA------------CUcCGCCGUaa -5'
30289 3' -49.5 NC_006324.1 + 34083 0.66 0.860527
Target:  5'- gGGAGGGGCGggGAGUGUccgugugcgugcGA-GCGGCGg- -3'
miRNA:   3'- -CCUUUCCGU--UUCAUA------------CUcCGCCGUaa -5'
30289 3' -49.5 NC_006324.1 + 941 0.66 0.860527
Target:  5'- gGGAGGGGCGggGAGUGUccgugugcgugcGA-GCGGCGg- -3'
miRNA:   3'- -CCUUUCCGU--UUCAUA------------CUcCGCCGUaa -5'
30289 3' -49.5 NC_006324.1 + 33664 0.66 0.860527
Target:  5'- gGGAGGGGCGggGAGUGUccgugugcgugcGA-GCGGCGg- -3'
miRNA:   3'- -CCUUUCCGU--UUCAUA------------CUcCGCCGUaa -5'
30289 3' -49.5 NC_006324.1 + 2994 0.67 0.780139
Target:  5'- uGAAAGGgaaCGAAGUAUuccuGGUGGCAUUa -3'
miRNA:   3'- cCUUUCC---GUUUCAUAcu--CCGCCGUAA- -5'
30289 3' -49.5 NC_006324.1 + 3803 0.68 0.757915
Target:  5'- cGGGAGuaAAAGcGUGGGGUGGUAUUu -3'
miRNA:   3'- cCUUUCcgUUUCaUACUCCGCCGUAA- -5'
30289 3' -49.5 NC_006324.1 + 27880 0.71 0.544071
Target:  5'- aGAGcGGGCAAGGUGUGAGuGUaGGCAc- -3'
miRNA:   3'- cCUU-UCCGUUUCAUACUC-CG-CCGUaa -5'
30289 3' -49.5 NC_006324.1 + 10597 0.73 0.431959
Target:  5'- cGGGAGGGCGAAGag-GAGGCucagaugaGGCAc- -3'
miRNA:   3'- -CCUUUCCGUUUCauaCUCCG--------CCGUaa -5'
30289 3' -49.5 NC_006324.1 + 27983 1.08 0.002196
Target:  5'- gGGAAAGGCAAAGUAUGAGGCGGCAUUu -3'
miRNA:   3'- -CCUUUCCGUUUCAUACUCCGCCGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.