Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 14933 | 0.7 | 0.472291 |
|
Target: 5'- uUGGUGCgaaaUGCACggCGCACgCUaGCCCg -3' miRNA: 3'- cAUCACGg---AUGUGa-GUGUG-GAaCGGG- -5' |
|||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 17639 | 0.66 | 0.723877 |
|
Target: 5'- aGUAGgucucugugGCCUGCGCgaacUGCACCagGCCg -3' miRNA: 3'- -CAUCa--------CGGAUGUGa---GUGUGGaaCGGg -5' |
|||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 18342 | 0.67 | 0.653525 |
|
Target: 5'- cGUGuUGCCUACguuggcgGCUgGCACCUUGUa- -3' miRNA: 3'- -CAUcACGGAUG-------UGAgUGUGGAACGgg -5' |
|||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 27925 | 0.66 | 0.701083 |
|
Target: 5'- ---aUGCC-GC-CUCAUACUUUGCCUu -3' miRNA: 3'- caucACGGaUGuGAGUGUGGAACGGG- -5' |
|||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 27944 | 1.13 | 0.000439 |
|
Target: 5'- aGUAGUGCCUACACUCACACCUUGCCCg -3' miRNA: 3'- -CAUCACGGAUGUGAGUGUGGAACGGG- -5' |
|||||||
| 30289 | 5' | -52.7 | NC_006324.1 | + | 32914 | 0.66 | 0.717077 |
|
Target: 5'- gGUGGUGCCauUAUACUCcagagauccaaaucCGCCUUcCCCu -3' miRNA: 3'- -CAUCACGG--AUGUGAGu-------------GUGGAAcGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home