miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30289 5' -52.7 NC_006324.1 + 14933 0.7 0.472291
Target:  5'- uUGGUGCgaaaUGCACggCGCACgCUaGCCCg -3'
miRNA:   3'- cAUCACGg---AUGUGa-GUGUG-GAaCGGG- -5'
30289 5' -52.7 NC_006324.1 + 17639 0.66 0.723877
Target:  5'- aGUAGgucucugugGCCUGCGCgaacUGCACCagGCCg -3'
miRNA:   3'- -CAUCa--------CGGAUGUGa---GUGUGGaaCGGg -5'
30289 5' -52.7 NC_006324.1 + 18342 0.67 0.653525
Target:  5'- cGUGuUGCCUACguuggcgGCUgGCACCUUGUa- -3'
miRNA:   3'- -CAUcACGGAUG-------UGAgUGUGGAACGgg -5'
30289 5' -52.7 NC_006324.1 + 27925 0.66 0.701083
Target:  5'- ---aUGCC-GC-CUCAUACUUUGCCUu -3'
miRNA:   3'- caucACGGaUGuGAGUGUGGAACGGG- -5'
30289 5' -52.7 NC_006324.1 + 27944 1.13 0.000439
Target:  5'- aGUAGUGCCUACACUCACACCUUGCCCg -3'
miRNA:   3'- -CAUCACGGAUGUGAGUGUGGAACGGG- -5'
30289 5' -52.7 NC_006324.1 + 32914 0.66 0.717077
Target:  5'- gGUGGUGCCauUAUACUCcagagauccaaaucCGCCUUcCCCu -3'
miRNA:   3'- -CAUCACGG--AUGUGAGu-------------GUGGAAcGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.