miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30291 5' -56.7 NC_006324.1 + 15060 1.1 0.000256
Target:  5'- gUUGAUGGCGCGUGCUGCCAACGCACCg -3'
miRNA:   3'- -AACUACCGCGCACGACGGUUGCGUGG- -5'
30291 5' -56.7 NC_006324.1 + 9279 0.68 0.347326
Target:  5'- gUGGUGGagGCG-GCUGUCuuCgGCGCCg -3'
miRNA:   3'- aACUACCg-CGCaCGACGGuuG-CGUGG- -5'
30291 5' -56.7 NC_006324.1 + 25032 0.66 0.46217
Target:  5'- ---uUGGgGCaG-GCUGCCGGCGCGUCa -3'
miRNA:   3'- aacuACCgCG-CaCGACGGUUGCGUGG- -5'
30291 5' -56.7 NC_006324.1 + 14996 0.66 0.472628
Target:  5'- ----gGGCuaGCGUGC-GCCGugcauuuCGCACCa -3'
miRNA:   3'- aacuaCCG--CGCACGaCGGUu------GCGUGG- -5'
30291 5' -56.7 NC_006324.1 + 2043 0.66 0.46217
Target:  5'- cUGGUGGCGCcgcuUGCgGCCAGCagGCGg- -3'
miRNA:   3'- aACUACCGCGc---ACGaCGGUUG--CGUgg -5'
30291 5' -56.7 NC_006324.1 + 15128 0.66 0.431552
Target:  5'- gUGGaGGCG-GUGCguugGCagcACGCGCCa -3'
miRNA:   3'- aACUaCCGCgCACGa---CGgu-UGCGUGG- -5'
30291 5' -56.7 NC_006324.1 + 12521 0.67 0.392641
Target:  5'- -gGgcGGCagaagGUGUGCUGCCGucuUGCAUCa -3'
miRNA:   3'- aaCuaCCG-----CGCACGACGGUu--GCGUGG- -5'
30291 5' -56.7 NC_006324.1 + 26517 0.69 0.298054
Target:  5'- gUGGUGGUG-GUGguagccauuauCUGCCAugGCugCu -3'
miRNA:   3'- aACUACCGCgCAC-----------GACGGUugCGugG- -5'
30291 5' -56.7 NC_006324.1 + 14957 0.77 0.085883
Target:  5'- ----cGGCGCGcaccGCUGCCGuaGCGCGCCu -3'
miRNA:   3'- aacuaCCGCGCa---CGACGGU--UGCGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.