miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30292 3' -61.6 NC_006324.1 + 127 0.67 0.255937
Target:  5'- --gCGUGCGAGcGGCGGG-GCgAGGCGc -3'
miRNA:   3'- ucgGCGCGCUU-CUGCCCgCGaUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 546 0.67 0.255937
Target:  5'- --gCGUGCGAGcGGCGGG-GCgAGGCGc -3'
miRNA:   3'- ucgGCGCGCUU-CUGCCCgCGaUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 965 0.67 0.255937
Target:  5'- --gCGUGCGAGcGGCGGG-GCgAGGCGc -3'
miRNA:   3'- ucgGCGCGCUU-CUGCCCgCGaUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 16359 0.67 0.255937
Target:  5'- cGCCGUcuGCaGGGACGGGUgauaGCgaacAGGCGg -3'
miRNA:   3'- uCGGCG--CGcUUCUGCCCG----CGa---UCCGC- -5'
30292 3' -61.6 NC_006324.1 + 33640 0.67 0.255937
Target:  5'- --gCGUGCGAGcGGCGGG-GCgAGGCGc -3'
miRNA:   3'- ucgGCGCGCUU-CUGCCCgCGaUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 34059 0.67 0.255937
Target:  5'- --gCGUGCGAGcGGCGGG-GCgAGGCGc -3'
miRNA:   3'- ucgGCGCGCUU-CUGCCCgCGaUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 10539 0.68 0.210077
Target:  5'- cAGUCGCGCaAcacccucucccuccuGGAUGGGCGgCgUAGGCGc -3'
miRNA:   3'- -UCGGCGCGcU---------------UCUGCCCGC-G-AUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 15135 0.68 0.186894
Target:  5'- cGCgGaCGUGGAGGCGGuGCGUU-GGCa -3'
miRNA:   3'- uCGgC-GCGCUUCUGCC-CGCGAuCCGc -5'
30292 3' -61.6 NC_006324.1 + 20758 0.7 0.138571
Target:  5'- -cUCGCaGUGuGGGCuGGGCGCUAGGUGa -3'
miRNA:   3'- ucGGCG-CGCuUCUG-CCCGCGAUCCGC- -5'
30292 3' -61.6 NC_006324.1 + 14873 0.72 0.099127
Target:  5'- cGCCGaCGCGGAGcCaGGCGCcgcAGGCGc -3'
miRNA:   3'- uCGGC-GCGCUUCuGcCCGCGa--UCCGC- -5'
30292 3' -61.6 NC_006324.1 + 16251 1.07 0.000174
Target:  5'- cAGCCGCGCGAAGACGGGCGCUAGGCGc -3'
miRNA:   3'- -UCGGCGCGCUUCUGCCCGCGAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.