miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30293 3' -46.5 NC_006324.1 + 6081 0.66 0.974398
Target:  5'- uGaCCCGCCGUAGGUAuaaa-AGggGCg -3'
miRNA:   3'- gC-GGGCGGCGUUUAUuucaaUCaaUG- -5'
30293 3' -46.5 NC_006324.1 + 28326 0.66 0.963756
Target:  5'- uGCCCuaGCCGCAGcgcuAGUgcGUUAUc -3'
miRNA:   3'- gCGGG--CGGCGUUuauuUCAauCAAUG- -5'
30293 3' -46.5 NC_006324.1 + 22140 0.67 0.950354
Target:  5'- aCGCUgCGCCGCAGAgcgccGAAGc--GUUACu -3'
miRNA:   3'- -GCGG-GCGGCGUUUa----UUUCaauCAAUG- -5'
30293 3' -46.5 NC_006324.1 + 11523 0.68 0.921397
Target:  5'- uGCgCGCCGCAGAcAcGGU--GUUGCg -3'
miRNA:   3'- gCGgGCGGCGUUUaUuUCAauCAAUG- -5'
30293 3' -46.5 NC_006324.1 + 16601 1.12 0.002995
Target:  5'- cCGCCCGCCGCAAAUAAAGUUAGUUACu -3'
miRNA:   3'- -GCGGGCGGCGUUUAUUUCAAUCAAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.