miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30295 5' -57.6 NC_006324.1 + 17490 0.66 0.434383
Target:  5'- aGAUGGCGaCuCCAUCGAUGAUGCCc- -3'
miRNA:   3'- -CUGCCGCgGcGGUAGCUGUUGUGGau -5'
30295 5' -57.6 NC_006324.1 + 14930 0.67 0.386499
Target:  5'- uGCGGCGCCugGCUccgcGUCGGCGGCGugUCUGa -3'
miRNA:   3'- cUGCCGCGG--CGG----UAGCUGUUGU--GGAU- -5'
30295 5' -57.6 NC_006324.1 + 7814 0.67 0.368344
Target:  5'- aGCGGCGCacgacCGCCAUacuaUGGgAGCACCUu -3'
miRNA:   3'- cUGCCGCG-----GCGGUA----GCUgUUGUGGAu -5'
30295 5' -57.6 NC_006324.1 + 9342 0.69 0.272078
Target:  5'- aGACGGCGCCGaa---GACAGcCGCCUc -3'
miRNA:   3'- -CUGCCGCGGCgguagCUGUU-GUGGAu -5'
30295 5' -57.6 NC_006324.1 + 16487 0.69 0.258149
Target:  5'- cGCGGCGCgCGCC-UCGACGAaggggACUUAa -3'
miRNA:   3'- cUGCCGCG-GCGGuAGCUGUUg----UGGAU- -5'
30295 5' -57.6 NC_006324.1 + 18029 0.73 0.149019
Target:  5'- uGGCGGCGCCGUCuauuUgGAUGGCGCCc- -3'
miRNA:   3'- -CUGCCGCGGCGGu---AgCUGUUGUGGau -5'
30295 5' -57.6 NC_006324.1 + 17982 1.06 0.000452
Target:  5'- aGACGGCGCCGCCAUCGACAACACCUAc -3'
miRNA:   3'- -CUGCCGCGGCGGUAGCUGUUGUGGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.