miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30299 5' -49.5 NC_006324.1 + 11257 0.66 0.893186
Target:  5'- -aGCGggUAgucAGCGCUgcCCGCAGaCGa -3'
miRNA:   3'- agCGCuaAUauuUCGCGA--GGUGUC-GC- -5'
30299 5' -49.5 NC_006324.1 + 15470 0.66 0.893186
Target:  5'- gCGCGGU----AGGCGCg-UACAGCGc -3'
miRNA:   3'- aGCGCUAauauUUCGCGagGUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 33900 0.66 0.877105
Target:  5'- cCGCGGgc--AAAGgGCUCCAauaaAGUGg -3'
miRNA:   3'- aGCGCUaauaUUUCgCGAGGUg---UCGC- -5'
30299 5' -49.5 NC_006324.1 + 286 0.66 0.877105
Target:  5'- cCGCGGgc--AAAGgGCUCCAauaaAGUGg -3'
miRNA:   3'- aGCGCUaauaUUUCgCGAGGUg---UCGC- -5'
30299 5' -49.5 NC_006324.1 + 705 0.66 0.877105
Target:  5'- cCGCGGgc--AAAGgGCUCCAauaaAGUGg -3'
miRNA:   3'- aGCGCUaauaUUUCgCGAGGUg---UCGC- -5'
30299 5' -49.5 NC_006324.1 + 22705 0.66 0.859841
Target:  5'- cUGCGAUU----AGCGCgacaCgACAGCGg -3'
miRNA:   3'- aGCGCUAAuauuUCGCGa---GgUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 7741 0.67 0.850788
Target:  5'- -aGCGAg---AAGGUGCUcCCAUAGUa -3'
miRNA:   3'- agCGCUaauaUUUCGCGA-GGUGUCGc -5'
30299 5' -49.5 NC_006324.1 + 12853 0.67 0.811999
Target:  5'- cCGCGGU---AGGGUGCgcagCCGCAGUc -3'
miRNA:   3'- aGCGCUAauaUUUCGCGa---GGUGUCGc -5'
30299 5' -49.5 NC_006324.1 + 22063 0.68 0.769683
Target:  5'- cUGCGGgccauccaGUAAcgcuucGGCGCUCUGCGGCGc -3'
miRNA:   3'- aGCGCUaa------UAUU------UCGCGAGGUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 22909 0.71 0.605512
Target:  5'- -aGCGc-UGUGGAGCGCUuuauaaucgcgagCCGCGGCGa -3'
miRNA:   3'- agCGCuaAUAUUUCGCGA-------------GGUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 13342 0.72 0.524767
Target:  5'- aUCGCGGgggcacGUAGAGCGgaUCCAUAGUGc -3'
miRNA:   3'- -AGCGCUaa----UAUUUCGCg-AGGUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 17215 0.73 0.502075
Target:  5'- cCGCGGUUccaAUAAGccuGCGCcCUACAGCGg -3'
miRNA:   3'- aGCGCUAA---UAUUU---CGCGaGGUGUCGC- -5'
30299 5' -49.5 NC_006324.1 + 22848 1.09 0.001986
Target:  5'- cUCGCGAUUAUAAAGCGCUCCACAGCGc -3'
miRNA:   3'- -AGCGCUAAUAUUUCGCGAGGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.