miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30302 5' -55.5 NC_006324.1 + 25221 1.09 0.000381
Target:  5'- uUUCAGCCAAUUGGCGCGCCUCAGACCu -3'
miRNA:   3'- -AAGUCGGUUAACCGCGCGGAGUCUGG- -5'
30302 5' -55.5 NC_006324.1 + 11498 0.67 0.460442
Target:  5'- ---cGCC--UUGGCGCGCCUgCAGuCUc -3'
miRNA:   3'- aaguCGGuuAACCGCGCGGA-GUCuGG- -5'
30302 5' -55.5 NC_006324.1 + 11964 0.66 0.50326
Target:  5'- --aGGCU-GUUGGUguugaaGUGCCUCAGACUg -3'
miRNA:   3'- aagUCGGuUAACCG------CGCGGAGUCUGG- -5'
30302 5' -55.5 NC_006324.1 + 23069 0.66 0.499987
Target:  5'- cUUGGCCAAuucUgcgucacugacaacUGGCGCGCCcccuUCuGGACCg -3'
miRNA:   3'- aAGUCGGUU---A--------------ACCGCGCGG----AG-UCUGG- -5'
30302 5' -55.5 NC_006324.1 + 15715 0.67 0.450039
Target:  5'- gUUgGGUUAGa-GGCguccaacacuaGCGCCUCAGACCg -3'
miRNA:   3'- -AAgUCGGUUaaCCG-----------CGCGGAGUCUGG- -5'
30302 5' -55.5 NC_006324.1 + 20624 0.67 0.450039
Target:  5'- --aAGCCAca-GGCgGCGCUguUCGGACCc -3'
miRNA:   3'- aagUCGGUuaaCCG-CGCGG--AGUCUGG- -5'
30302 5' -55.5 NC_006324.1 + 16935 0.68 0.38109
Target:  5'- uUUCAGCUu-UUGGCGCaacGCCUgccCAGugCu -3'
miRNA:   3'- -AAGUCGGuuAACCGCG---CGGA---GUCugG- -5'
30302 5' -55.5 NC_006324.1 + 18247 0.69 0.336351
Target:  5'- ---cGCCA---GGCGCGCCUCcaGCCa -3'
miRNA:   3'- aaguCGGUuaaCCGCGCGGAGucUGG- -5'
30302 5' -55.5 NC_006324.1 + 8872 0.7 0.319559
Target:  5'- -gCAGCCAccGUUGaGCGCGCUggCAGAg- -3'
miRNA:   3'- aaGUCGGU--UAAC-CGCGCGGa-GUCUgg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.