miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30303 3' -53.8 NC_006324.1 + 19124 0.66 0.623582
Target:  5'- gUCCCAgGCAGCagaagaaGGUucuUGAUGGCg -3'
miRNA:   3'- -AGGGU-CGUCGgua----CCGucuAUUACCG- -5'
30303 3' -53.8 NC_006324.1 + 2035 0.67 0.577044
Target:  5'- -gCCGcuuGCGGCCAgcaGGCGGAgacgAAacUGGCg -3'
miRNA:   3'- agGGU---CGUCGGUa--CCGUCUa---UU--ACCG- -5'
30303 3' -53.8 NC_006324.1 + 20498 0.69 0.454884
Target:  5'- gCCgCAGC-GCCuUGGCGGcUAcUGGCg -3'
miRNA:   3'- aGG-GUCGuCGGuACCGUCuAUuACCG- -5'
30303 3' -53.8 NC_006324.1 + 19408 0.71 0.328139
Target:  5'- gCCCAGUuGCgAgaugggauggaaauUGGCAGGUuAGUGGCa -3'
miRNA:   3'- aGGGUCGuCGgU--------------ACCGUCUA-UUACCG- -5'
30303 3' -53.8 NC_006324.1 + 26443 1.12 0.000359
Target:  5'- cUCCCAGCAGCCAUGGCAGAUAAUGGCu -3'
miRNA:   3'- -AGGGUCGUCGGUACCGUCUAUUACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.