miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30303 5' -56.9 NC_006324.1 + 26477 1.11 0.000237
Target:  5'- aCCACCACACCUGCGCGCCGUUGCUACu -3'
miRNA:   3'- -GGUGGUGUGGACGCGCGGCAACGAUG- -5'
30303 5' -56.9 NC_006324.1 + 27034 0.69 0.30622
Target:  5'- uCUGCCACuugaucacugACCUGUacuggGCGCUGUguggGCUGCa -3'
miRNA:   3'- -GGUGGUG----------UGGACG-----CGCGGCAa---CGAUG- -5'
30303 5' -56.9 NC_006324.1 + 32157 0.69 0.322101
Target:  5'- cUCACCGCGCaCUGC-UGCCuGUuuUGCUAUg -3'
miRNA:   3'- -GGUGGUGUG-GACGcGCGG-CA--ACGAUG- -5'
30303 5' -56.9 NC_006324.1 + 6786 0.69 0.330269
Target:  5'- -aGCCGCugaACCcauucgaGCGCGCaGUUGCUGCa -3'
miRNA:   3'- ggUGGUG---UGGa------CGCGCGgCAACGAUG- -5'
30303 5' -56.9 NC_006324.1 + 14949 0.69 0.330269
Target:  5'- aCCGCUgccguagcGCGCCUGCgGCGCCug-GCUccGCg -3'
miRNA:   3'- -GGUGG--------UGUGGACG-CGCGGcaaCGA--UG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.