Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30303 | 5' | -56.9 | NC_006324.1 | + | 26477 | 1.11 | 0.000237 |
Target: 5'- aCCACCACACCUGCGCGCCGUUGCUACu -3' miRNA: 3'- -GGUGGUGUGGACGCGCGGCAACGAUG- -5' |
|||||||
30303 | 5' | -56.9 | NC_006324.1 | + | 27034 | 0.69 | 0.30622 |
Target: 5'- uCUGCCACuugaucacugACCUGUacuggGCGCUGUguggGCUGCa -3' miRNA: 3'- -GGUGGUG----------UGGACG-----CGCGGCAa---CGAUG- -5' |
|||||||
30303 | 5' | -56.9 | NC_006324.1 | + | 32157 | 0.69 | 0.322101 |
Target: 5'- cUCACCGCGCaCUGC-UGCCuGUuuUGCUAUg -3' miRNA: 3'- -GGUGGUGUG-GACGcGCGG-CA--ACGAUG- -5' |
|||||||
30303 | 5' | -56.9 | NC_006324.1 | + | 6786 | 0.69 | 0.330269 |
Target: 5'- -aGCCGCugaACCcauucgaGCGCGCaGUUGCUGCa -3' miRNA: 3'- ggUGGUG---UGGa------CGCGCGgCAACGAUG- -5' |
|||||||
30303 | 5' | -56.9 | NC_006324.1 | + | 14949 | 0.69 | 0.330269 |
Target: 5'- aCCGCUgccguagcGCGCCUGCgGCGCCug-GCUccGCg -3' miRNA: 3'- -GGUGG--------UGUGGACG-CGCGGcaaCGA--UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home