miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30305 5' -60.5 NC_006324.1 + 17264 0.66 0.31305
Target:  5'- aGUAGUcACUguacCGGCgGCC-CGCCCCGUa -3'
miRNA:   3'- -CGUCAcUGA----GUCG-CGGaGCGGGGCGg -5'
30305 5' -60.5 NC_006324.1 + 16551 0.66 0.31305
Target:  5'- aGCGGcGGCaaUUGGCGCUgCGCCCgGCa -3'
miRNA:   3'- -CGUCaCUG--AGUCGCGGaGCGGGgCGg -5'
30305 5' -60.5 NC_006324.1 + 22321 0.66 0.318474
Target:  5'- gGCucGUGAUUCGGCGCCg-GCUcggagcuggacugaCCGCUg -3'
miRNA:   3'- -CGu-CACUGAGUCGCGGagCGG--------------GGCGG- -5'
30305 5' -60.5 NC_006324.1 + 16617 0.67 0.2906
Target:  5'- uGCAaugccgGGCgCAGCGCCaaUUGCCgCCGCUa -3'
miRNA:   3'- -CGUca----CUGaGUCGCGG--AGCGG-GGCGG- -5'
30305 5' -60.5 NC_006324.1 + 14941 0.68 0.243163
Target:  5'- cGUAGcGcGCcugCGGCGCCUgGCUCCGCg -3'
miRNA:   3'- -CGUCaC-UGa--GUCGCGGAgCGGGGCGg -5'
30305 5' -60.5 NC_006324.1 + 3539 0.69 0.213361
Target:  5'- aGCAuUGGCguaaaAGUGCCUUGCCUggCGCCc -3'
miRNA:   3'- -CGUcACUGag---UCGCGGAGCGGG--GCGG- -5'
30305 5' -60.5 NC_006324.1 + 33993 0.98 0.001255
Target:  5'- ---cUGACUCAGCGCCUCGCCCCGCCg -3'
miRNA:   3'- cgucACUGAGUCGCGGAGCGGGGCGG- -5'
30305 5' -60.5 NC_006324.1 + 611 0.98 0.001255
Target:  5'- ---cUGACUCAGCGCCUCGCCCCGCCg -3'
miRNA:   3'- cgucACUGAGUCGCGGAGCGGGGCGG- -5'
30305 5' -60.5 NC_006324.1 + 193 0.98 0.001255
Target:  5'- ---cUGACUCAGCGCCUCGCCCCGCCg -3'
miRNA:   3'- cgucACUGAGUCGCGGAGCGGGGCGG- -5'
30305 5' -60.5 NC_006324.1 + 33571 1.13 0.000081
Target:  5'- gGCAGUGACUCAGCGCCUCGCCCCGCCg -3'
miRNA:   3'- -CGUCACUGAGUCGCGGAGCGGGGCGG- -5'
30305 5' -60.5 NC_006324.1 + 1034 1.13 0.000081
Target:  5'- gGCAGUGACUCAGCGCCUCGCCCCGCCg -3'
miRNA:   3'- -CGUCACUGAGUCGCGGAGCGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.