Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30306 | 3' | -49.4 | NC_006367.1 | + | 2749 | 0.65 | 0.372617 |
Target: 5'- --cGACGGccccGGAUGCAgGGCCGAcccccgaaccccaCGGCg -3' miRNA: 3'- uuuCUGCU----UUUGUGUgCUGGCU-------------GCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 4534 | 0.66 | 0.331857 |
Target: 5'- -cGGAUGcAAGgGCugcuauCGACCGAgCGGCa -3' miRNA: 3'- uuUCUGCuUUUgUGu-----GCUGGCU-GCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 806 | 0.67 | 0.284536 |
Target: 5'- ---cGCGggGACAgACGACUuggGGCGGa -3' miRNA: 3'- uuucUGCuuUUGUgUGCUGG---CUGCCg -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 1333 | 0.71 | 0.168617 |
Target: 5'- -uGGugGAGAcCACGCG--UGACGGCa -3' miRNA: 3'- uuUCugCUUUuGUGUGCugGCUGCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 2114 | 0.71 | 0.151729 |
Target: 5'- cGAAGGCGAggucggucgggucGAACugGuCGACgaUGACGGCg -3' miRNA: 3'- -UUUCUGCU-------------UUUGugU-GCUG--GCUGCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 3013 | 0.74 | 0.096833 |
Target: 5'- ---cACaAGAGCgACACGGCCGugGGCa -3' miRNA: 3'- uuucUGcUUUUG-UGUGCUGGCugCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 2267 | 0.74 | 0.090215 |
Target: 5'- cGAAGugcCGGAAACGaa-GACCGAUGGCa -3' miRNA: 3'- -UUUCu--GCUUUUGUgugCUGGCUGCCG- -5' |
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30306 | 3' | -49.4 | NC_006367.1 | + | 767 | 1.11 | 0.000101 |
Target: 5'- gAAAGACGAAAACACACGACCGACGGCg -3' miRNA: 3'- -UUUCUGCUUUUGUGUGCUGGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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