miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30316 5' -57 NC_006367.1 + 3945 0.67 0.085148
Target:  5'- aCGGGGUCAaGGAGccaGGACcaAGCGAa -3'
miRNA:   3'- aGCCUCAGUgCCUC---CCUGcaUCGCUg -5'
30316 5' -57 NC_006367.1 + 2668 0.69 0.062805
Target:  5'- cUGGuGGUCuuggcGCGGcugGGGGugGUGGUGGCa -3'
miRNA:   3'- aGCC-UCAG-----UGCC---UCCCugCAUCGCUG- -5'
30316 5' -57 NC_006367.1 + 4385 0.69 0.064977
Target:  5'- gUGGAGgcaUCACGGAGGGuACG-AGUcGCa -3'
miRNA:   3'- aGCCUC---AGUGCCUCCC-UGCaUCGcUG- -5'
30316 5' -57 NC_006367.1 + 1461 1.1 0.000016
Target:  5'- gUCGGAGUCACGGAGGGACGUAGCGACg -3'
miRNA:   3'- -AGCCUCAGUGCCUCCCUGCAUCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.