miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30323 3' -53.9 NC_006383.2 + 4680 1.12 0.000197
Target:  5'- cCCAAAAACGUCCCCCCAACACGCCCGa -3'
miRNA:   3'- -GGUUUUUGCAGGGGGGUUGUGCGGGC- -5'
30323 3' -53.9 NC_006383.2 + 4546 0.74 0.138833
Target:  5'- cCCGAugGGACGaggccggCCCCCCAACAaaCCCGg -3'
miRNA:   3'- -GGUU--UUUGCa------GGGGGGUUGUgcGGGC- -5'
30323 3' -53.9 NC_006383.2 + 4822 0.71 0.21036
Target:  5'- cCCAagcAAGGCGgaCCCCCAACACgaaacuGCCCa -3'
miRNA:   3'- -GGU---UUUUGCagGGGGGUUGUG------CGGGc -5'
30323 3' -53.9 NC_006383.2 + 5421 0.71 0.227376
Target:  5'- cCCGAAGAggcccCGgcaaggCCCCCCAgcccgacgaccccuGCACGCaCCGg -3'
miRNA:   3'- -GGUUUUU-----GCa-----GGGGGGU--------------UGUGCG-GGC- -5'
30323 3' -53.9 NC_006383.2 + 4996 0.7 0.271622
Target:  5'- cCCAGGGAaggaGUCCCCCCccACACGgCg- -3'
miRNA:   3'- -GGUUUUUg---CAGGGGGGu-UGUGCgGgc -5'
30323 3' -53.9 NC_006383.2 + 5376 0.68 0.364936
Target:  5'- aCCGAGAGCcagccagagGUCCCCuCCAGuCcCGUCCa -3'
miRNA:   3'- -GGUUUUUG---------CAGGGG-GGUU-GuGCGGGc -5'
30323 3' -53.9 NC_006383.2 + 4582 0.67 0.414109
Target:  5'- uCCAG--GCGgggggcccCCCCCCGACcUGCCgGg -3'
miRNA:   3'- -GGUUuuUGCa-------GGGGGGUUGuGCGGgC- -5'
30323 3' -53.9 NC_006383.2 + 13834 0.68 0.355598
Target:  5'- gUAGAGGaGUUCCCCCAucugguGCuuGCCCGa -3'
miRNA:   3'- gGUUUUUgCAGGGGGGU------UGugCGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.