miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30323 5' -65.8 NC_006383.2 + 4715 1.1 0.000014
Target:  5'- cGCCGGGCACCCCCAGACCCGCCACCGg -3'
miRNA:   3'- -CGGCCCGUGGGGGUCUGGGCGGUGGC- -5'
30323 5' -65.8 NC_006383.2 + 4586 0.75 0.016163
Target:  5'- gGCgGGGgGCCCCCccccGACCUGCCgggcGCCGa -3'
miRNA:   3'- -CGgCCCgUGGGGGu---CUGGGCGG----UGGC- -5'
30323 5' -65.8 NC_006383.2 + 5340 0.72 0.028623
Target:  5'- aCCGGGacaggggcucCGCCaCCaCAGACCagaGCCACCGa -3'
miRNA:   3'- cGGCCC----------GUGG-GG-GUCUGGg--CGGUGGC- -5'
30323 5' -65.8 NC_006383.2 + 5096 0.72 0.030391
Target:  5'- gGCCGGGCGCacaCCAGACU--CCACCa -3'
miRNA:   3'- -CGGCCCGUGgg-GGUCUGGgcGGUGGc -5'
30323 5' -65.8 NC_006383.2 + 9160 0.67 0.073978
Target:  5'- cGCCacucaGGCAgUCCCuuGAgUCGCCACCGa -3'
miRNA:   3'- -CGGc----CCGUgGGGGu-CUgGGCGGUGGC- -5'
30323 5' -65.8 NC_006383.2 + 6156 0.66 0.088118
Target:  5'- uUCGGGCccaGCCUUCgAGACCCgauaGCUGCCGa -3'
miRNA:   3'- cGGCCCG---UGGGGG-UCUGGG----CGGUGGC- -5'
30323 5' -65.8 NC_006383.2 + 12773 0.66 0.085594
Target:  5'- aUCGGGCACCUCCaacccauagauuGGucuCCCGCgaGCCa -3'
miRNA:   3'- cGGCCCGUGGGGG------------UCu--GGGCGg-UGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.