miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30324 3' -55.1 NC_006383.2 + 14452 0.67 0.345459
Target:  5'- -aAGggGGAGaGAaaucagucaACCCAACaACCGAu -3'
miRNA:   3'- ggUCuuCCUC-CUg--------UGGGUUGgUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 12172 0.72 0.161325
Target:  5'- aUAG-AGGAGGugACCgGGUCACCGAu -3'
miRNA:   3'- gGUCuUCCUCCugUGGgUUGGUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 11653 0.7 0.216238
Target:  5'- -aAGAGGGAGG-CAUCCAaaGCCGCUc- -3'
miRNA:   3'- ggUCUUCCUCCuGUGGGU--UGGUGGcu -5'
30324 3' -55.1 NC_006383.2 + 7213 0.71 0.181603
Target:  5'- gUCAGAGGacgcAGGAaACCCAGCCuCCGAu -3'
miRNA:   3'- -GGUCUUCc---UCCUgUGGGUUGGuGGCU- -5'
30324 3' -55.1 NC_006383.2 + 5469 0.67 0.336511
Target:  5'- aCCGGAAGaGGGACccGCCCGagaACguCCGGc -3'
miRNA:   3'- -GGUCUUCcUCCUG--UGGGU---UGguGGCU- -5'
30324 3' -55.1 NC_006383.2 + 5290 0.72 0.139279
Target:  5'- cCCAGAA-GAGGACACCCccgcacacuccgaacAcccccucgccccccGCCACCGGg -3'
miRNA:   3'- -GGUCUUcCUCCUGUGGG---------------U--------------UGGUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 5118 0.68 0.302422
Target:  5'- aCCAGAGGagccGAGGAgaGCCUGACC-CCGc -3'
miRNA:   3'- -GGUCUUC----CUCCUg-UGGGUUGGuGGCu -5'
30324 3' -55.1 NC_006383.2 + 4960 1.11 0.000145
Target:  5'- cCCAGAAGGAGGACACCCAACCACCGAa -3'
miRNA:   3'- -GGUCUUCCUCCUGUGGGUUGGUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 4747 0.74 0.108489
Target:  5'- aCAGAaccccaaGGGGGGACcCCCcaaaccaaaggGACCACCGGg -3'
miRNA:   3'- gGUCU-------UCCUCCUGuGGG-----------UUGGUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 4709 0.7 0.198262
Target:  5'- gCCAGgcGccGGGCACCCccagacccGCCACCGGc -3'
miRNA:   3'- -GGUCuuCcuCCUGUGGGu-------UGGUGGCU- -5'
30324 3' -55.1 NC_006383.2 + 4619 0.69 0.256379
Target:  5'- --cGggGGGGGGCcCCCcGCCuggACCGGg -3'
miRNA:   3'- gguCuuCCUCCUGuGGGuUGG---UGGCU- -5'
30324 3' -55.1 NC_006383.2 + 4582 0.78 0.058301
Target:  5'- uCCAGgcGGGGGGCcccccCCCGACCuGCCGGg -3'
miRNA:   3'- -GGUCuuCCUCCUGu----GGGUUGG-UGGCU- -5'
30324 3' -55.1 NC_006383.2 + 1481 0.71 0.166195
Target:  5'- cCCAG-AGGAGaGACcCCCAGCCaACUGc -3'
miRNA:   3'- -GGUCuUCCUC-CUGuGGGUUGG-UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.