miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30324 5' -62.9 NC_006383.2 + 4994 1.09 0.000033
Target:  5'- gCCCCAGGGAAGGAGUCCCCCCCCACAc -3'
miRNA:   3'- -GGGGUCCCUUCCUCAGGGGGGGGUGU- -5'
30324 5' -62.9 NC_006383.2 + 4581 0.75 0.023027
Target:  5'- gUCCAGGcGGGGGGcCCCCCCCCGa- -3'
miRNA:   3'- gGGGUCCcUUCCUCaGGGGGGGGUgu -5'
30324 5' -62.9 NC_006383.2 + 4466 0.75 0.025244
Target:  5'- cCCCCA-GGAAGGGGccccacCCUCCCCCGCc -3'
miRNA:   3'- -GGGGUcCCUUCCUCa-----GGGGGGGGUGu -5'
30324 5' -62.9 NC_006383.2 + 4630 0.72 0.041011
Target:  5'- gCCCGgcaggucGGGggGGGG-CCCCCCgCCugGa -3'
miRNA:   3'- gGGGU-------CCCuuCCUCaGGGGGG-GGugU- -5'
30324 5' -62.9 NC_006383.2 + 4808 0.72 0.046444
Target:  5'- uCCCCGGuGGucccuuugguuuGGGGGGUCCCCCCUUGgGg -3'
miRNA:   3'- -GGGGUC-CC------------UUCCUCAGGGGGGGGUgU- -5'
30324 5' -62.9 NC_006383.2 + 9334 0.68 0.099307
Target:  5'- aCCUCAGGGuacaagaccugauugAcugauaGGGAGUCCauggCCCCUACAg -3'
miRNA:   3'- -GGGGUCCC---------------U------UCCUCAGGg---GGGGGUGU- -5'
30324 5' -62.9 NC_006383.2 + 5332 0.66 0.124014
Target:  5'- cCCCCGccaccGGGAcAGGGG-CUCCgCCaCCACAg -3'
miRNA:   3'- -GGGGU-----CCCU-UCCUCaGGGG-GG-GGUGU- -5'
30324 5' -62.9 NC_006383.2 + 4752 0.66 0.127662
Target:  5'- aCCCCAaGGggGGA--CCCCCCaaaccaaagggaCCACc -3'
miRNA:   3'- -GGGGUcCCuuCCUcaGGGGGG------------GGUGu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.