Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3035 | 3' | -60 | NC_001493.1 | + | 13117 | 1.08 | 0.001347 |
Target: 5'- gAGAUCCCGAGACUGGAGCCCCGGUCUa -3' miRNA: 3'- -UCUAGGGCUCUGACCUCGGGGCCAGA- -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 131513 | 0.66 | 0.738411 |
Target: 5'- ---aCCCG-GAUUGGAGC-CCGGUg- -3' miRNA: 3'- ucuaGGGCuCUGACCUCGgGGCCAga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 125973 | 0.66 | 0.699508 |
Target: 5'- gGGAUCa-GAccGugUGGgcacAGCCCCGGUCc -3' miRNA: 3'- -UCUAGggCU--CugACC----UCGGGGCCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 10419 | 0.66 | 0.699508 |
Target: 5'- gGGAUCa-GAccGugUGGgcacAGCCCCGGUCc -3' miRNA: 3'- -UCUAGggCU--CugACC----UCGGGGCCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 130442 | 0.67 | 0.669728 |
Target: 5'- --cUCgUCGAGACgcgaGGGGCCCCGGa-- -3' miRNA: 3'- ucuAG-GGCUCUGa---CCUCGGGGCCaga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 14888 | 0.67 | 0.669728 |
Target: 5'- --cUCgUCGAGACgcgaGGGGCCCCGGa-- -3' miRNA: 3'- ucuAG-GGCUCUGa---CCUCGGGGCCaga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 131592 | 0.68 | 0.599577 |
Target: 5'- -cGUCCau-GACUGGAGCgaCCUGGUCa -3' miRNA: 3'- ucUAGGgcuCUGACCUCG--GGGCCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 16037 | 0.68 | 0.599577 |
Target: 5'- -cGUCCau-GACUGGAGCgaCCUGGUCa -3' miRNA: 3'- ucUAGGgcuCUGACCUCG--GGGCCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 53941 | 0.68 | 0.58959 |
Target: 5'- gGGAUUCCugGAGACgGGugcgacGCCCCGGUg- -3' miRNA: 3'- -UCUAGGG--CUCUGaCCu-----CGGGGCCAga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 130356 | 0.71 | 0.410738 |
Target: 5'- uGGGUCCCaacgGGGGCuggcacgUGGAGCCCCgcguGGUCg -3' miRNA: 3'- -UCUAGGG----CUCUG-------ACCUCGGGG----CCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 14802 | 0.71 | 0.410738 |
Target: 5'- uGGGUCCCaacgGGGGCuggcacgUGGAGCCCCgcguGGUCg -3' miRNA: 3'- -UCUAGGG----CUCUG-------ACCUCGGGG----CCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 128672 | 1.08 | 0.001347 |
Target: 5'- gAGAUCCCGAGACUGGAGCCCCGGUCUa -3' miRNA: 3'- -UCUAGGGCUCUGACCUCGGGGCCAGA- -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 97230 | 0.67 | 0.649714 |
Target: 5'- cAGAcCCCGAGG-UGGAGCCuguCCGGg-- -3' miRNA: 3'- -UCUaGGGCUCUgACCUCGG---GGCCaga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 29661 | 0.67 | 0.639684 |
Target: 5'- aGGGUCCgCGAG-CUGGAGCaaCGGg-- -3' miRNA: 3'- -UCUAGG-GCUCuGACCUCGggGCCaga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 42244 | 0.68 | 0.599577 |
Target: 5'- aAGGUCCgGAGACacagGGGGCacguCCCGGg-- -3' miRNA: 3'- -UCUAGGgCUCUGa---CCUCG----GGGCCaga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 50548 | 0.69 | 0.550005 |
Target: 5'- cGAgCCCGuguGGCUGG-GUCCCGGUa- -3' miRNA: 3'- uCUaGGGCu--CUGACCuCGGGGCCAga -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 30512 | 0.69 | 0.52086 |
Target: 5'- gGGAaaucUCUCGAcGaACUcGGGGCCCUGGUCg -3' miRNA: 3'- -UCU----AGGGCU-C-UGA-CCUCGGGGCCAGa -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 11284 | 0.69 | 0.511277 |
Target: 5'- uGGUCCCG-----GGAGCCCuCGGUCUg -3' miRNA: 3'- uCUAGGGCucugaCCUCGGG-GCCAGA- -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 126838 | 0.69 | 0.511277 |
Target: 5'- uGGUCCCG-----GGAGCCCuCGGUCUg -3' miRNA: 3'- uCUAGGGCucugaCCUCGGG-GCCAGA- -5' |
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3035 | 3' | -60 | NC_001493.1 | + | 88577 | 0.67 | 0.679695 |
Target: 5'- aAGcAUCCCGAGGCauacccGGAGUacaCGGUCg -3' miRNA: 3'- -UC-UAGGGCUCUGa-----CCUCGgg-GCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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