miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3036 3' -54.7 NC_001493.1 + 26362 0.67 0.906846
Target:  5'- aCCAUCc--GGCCUgaagugGUGCCCCCCUc-- -3'
miRNA:   3'- -GGUAGacaCUGGG------CAUGGGGGGAaug -5'
3036 3' -54.7 NC_001493.1 + 110403 0.67 0.906846
Target:  5'- gCAUCgUGUGuCCCaGUcgccACCCCCCgccACa -3'
miRNA:   3'- gGUAG-ACACuGGG-CA----UGGGGGGaa-UG- -5'
3036 3' -54.7 NC_001493.1 + 62396 0.67 0.906846
Target:  5'- -gGUUUGUGaccGCCCGguggaccucGCCCCCCgUGCc -3'
miRNA:   3'- ggUAGACAC---UGGGCa--------UGGGGGGaAUG- -5'
3036 3' -54.7 NC_001493.1 + 66497 0.67 0.900509
Target:  5'- aCC-UCUaUGACCUGgucgACCCCUCgucgUACa -3'
miRNA:   3'- -GGuAGAcACUGGGCa---UGGGGGGa---AUG- -5'
3036 3' -54.7 NC_001493.1 + 30326 0.67 0.887127
Target:  5'- cCCGUCc--GACCCG-AUCCCCCcgACc -3'
miRNA:   3'- -GGUAGacaCUGGGCaUGGGGGGaaUG- -5'
3036 3' -54.7 NC_001493.1 + 113853 0.68 0.84081
Target:  5'- gCGUCUGUGcCCCacaguaaccgcagGUGCCCCUCg--- -3'
miRNA:   3'- gGUAGACACuGGG-------------CAUGGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 101051 0.69 0.807334
Target:  5'- aCCAUCUcuaUGACCCGcuuCCCuCCCUUc- -3'
miRNA:   3'- -GGUAGAc--ACUGGGCau-GGG-GGGAAug -5'
3036 3' -54.7 NC_001493.1 + 123984 0.69 0.798332
Target:  5'- gCggCUGUgGACCCGggcACCCCCCc--- -3'
miRNA:   3'- gGuaGACA-CUGGGCa--UGGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 8430 0.69 0.798332
Target:  5'- gCggCUGUgGACCCGggcACCCCCCc--- -3'
miRNA:   3'- gGuaGACA-CUGGGCa--UGGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 124753 0.7 0.789178
Target:  5'- cCCGUCUucGUGuACCUGgagcUACCCCCCg--- -3'
miRNA:   3'- -GGUAGA--CAC-UGGGC----AUGGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 9199 0.7 0.789178
Target:  5'- cCCGUCUucGUGuACCUGgagcUACCCCCCg--- -3'
miRNA:   3'- -GGUAGA--CAC-UGGGC----AUGGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 112206 0.72 0.650119
Target:  5'- uCCAUUgcgGUGGCUCGUGCCCUag-UACg -3'
miRNA:   3'- -GGUAGa--CACUGGGCAUGGGGggaAUG- -5'
3036 3' -54.7 NC_001493.1 + 83353 0.73 0.608765
Target:  5'- gCUAUCUGUGACCCugacGUGaCCCCCg--- -3'
miRNA:   3'- -GGUAGACACUGGG----CAUgGGGGGaaug -5'
3036 3' -54.7 NC_001493.1 + 129083 1.1 0.002859
Target:  5'- gCCAUCUGUGACCCGUACCCCCCUUACc -3'
miRNA:   3'- -GGUAGACACUGGGCAUGGGGGGAAUG- -5'
3036 3' -54.7 NC_001493.1 + 13529 1.1 0.002859
Target:  5'- gCCAUCUGUGACCCGUACCCCCCUUACc -3'
miRNA:   3'- -GGUAGACACUGGGCAUGGGGGGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.