miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3036 5' -62.2 NC_001493.1 + 19571 0.66 0.65367
Target:  5'- gGGUGG-GAGGCCCaucuccauaGAGG-CGGCCg- -3'
miRNA:   3'- gCCACCuCUCCGGG---------CUCUgGCUGGgc -5'
3036 5' -62.2 NC_001493.1 + 59617 0.66 0.65367
Target:  5'- cCGGUGGAuugguuGuGGCCCucGACgGcCCCGu -3'
miRNA:   3'- -GCCACCU------CuCCGGGcuCUGgCuGGGC- -5'
3036 5' -62.2 NC_001493.1 + 43733 0.66 0.643912
Target:  5'- uGGUGGGGuuGGCCaCGAGcCCcgauGACuCCGc -3'
miRNA:   3'- gCCACCUCu-CCGG-GCUCuGG----CUG-GGC- -5'
3036 5' -62.2 NC_001493.1 + 48110 0.66 0.634147
Target:  5'- cCGcGUGGAG-GGCCuCGGcgcacCCGACCCc -3'
miRNA:   3'- -GC-CACCUCuCCGG-GCUcu---GGCUGGGc -5'
3036 5' -62.2 NC_001493.1 + 89760 0.66 0.614618
Target:  5'- uCGGUGGAagcccGAuGCCC-AGACCGACUa- -3'
miRNA:   3'- -GCCACCU-----CUcCGGGcUCUGGCUGGgc -5'
3036 5' -62.2 NC_001493.1 + 8346 0.66 0.614618
Target:  5'- -cGUGGAGGGGCCgCGcGuCUcGCCCGa -3'
miRNA:   3'- gcCACCUCUCCGG-GCuCuGGcUGGGC- -5'
3036 5' -62.2 NC_001493.1 + 123900 0.66 0.614618
Target:  5'- -cGUGGAGGGGCCgCGcGuCUcGCCCGa -3'
miRNA:   3'- gcCACCUCUCCGG-GCuCuGGcUGGGC- -5'
3036 5' -62.2 NC_001493.1 + 16539 0.67 0.608766
Target:  5'- cCGGUGagggugccccagggcGAGAGGCCCGuGGACgGuCUCa -3'
miRNA:   3'- -GCCAC---------------CUCUCCGGGC-UCUGgCuGGGc -5'
3036 5' -62.2 NC_001493.1 + 132093 0.67 0.608766
Target:  5'- cCGGUGagggugccccagggcGAGAGGCCCGuGGACgGuCUCa -3'
miRNA:   3'- -GCCAC---------------CUCUCCGGGC-UCUGgCuGGGc -5'
3036 5' -62.2 NC_001493.1 + 88027 0.67 0.604868
Target:  5'- gCGGUgGGAGAGuuUCGAGAUCGGuaaCCGg -3'
miRNA:   3'- -GCCA-CCUCUCcgGGCUCUGGCUg--GGC- -5'
3036 5' -62.2 NC_001493.1 + 113314 0.67 0.604868
Target:  5'- uCGGUGGAacGucGauaCCGAGACCaACCCa -3'
miRNA:   3'- -GCCACCU--CucCg--GGCUCUGGcUGGGc -5'
3036 5' -62.2 NC_001493.1 + 37545 0.67 0.604868
Target:  5'- gGGaUGGAGGGGUCgucGACCGggucGCCCGg -3'
miRNA:   3'- gCC-ACCUCUCCGGgcuCUGGC----UGGGC- -5'
3036 5' -62.2 NC_001493.1 + 19713 0.67 0.595136
Target:  5'- aGGUguacgccugGGAGAuGGCCUGuaAGAUCGACgCCGc -3'
miRNA:   3'- gCCA---------CCUCU-CCGGGC--UCUGGCUG-GGC- -5'
3036 5' -62.2 NC_001493.1 + 23265 0.67 0.58543
Target:  5'- uGGUGGAG-GGUCaCGuaucGACCGAUCUc -3'
miRNA:   3'- gCCACCUCuCCGG-GCu---CUGGCUGGGc -5'
3036 5' -62.2 NC_001493.1 + 4015 0.67 0.575754
Target:  5'- aGGUGGAGA-GCaCgGuGACCGGcauCCCGa -3'
miRNA:   3'- gCCACCUCUcCG-GgCuCUGGCU---GGGC- -5'
3036 5' -62.2 NC_001493.1 + 119570 0.67 0.575754
Target:  5'- aGGUGGAGA-GCaCgGuGACCGGcauCCCGa -3'
miRNA:   3'- gCCACCUCUcCG-GgCuCUGGCU---GGGC- -5'
3036 5' -62.2 NC_001493.1 + 33524 0.67 0.565153
Target:  5'- gGGUGGgucauccAGAGGCUCGcGACgccccUGACCCa -3'
miRNA:   3'- gCCACC-------UCUCCGGGCuCUG-----GCUGGGc -5'
3036 5' -62.2 NC_001493.1 + 8115 0.68 0.546968
Target:  5'- ---aGaGAGAGGaCCCgGAGAgcCCGACCCGc -3'
miRNA:   3'- gccaC-CUCUCC-GGG-CUCU--GGCUGGGC- -5'
3036 5' -62.2 NC_001493.1 + 123670 0.68 0.546968
Target:  5'- ---aGaGAGAGGaCCCgGAGAgcCCGACCCGc -3'
miRNA:   3'- gccaC-CUCUCC-GGG-CUCU--GGCUGGGC- -5'
3036 5' -62.2 NC_001493.1 + 130463 0.68 0.546968
Target:  5'- cCGGagGGAGcGGUgCGGGugCGgGCCCGa -3'
miRNA:   3'- -GCCa-CCUCuCCGgGCUCugGC-UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.