Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3037 | 3' | -54.3 | NC_001493.1 | + | 73454 | 0.66 | 0.944607 |
Target: 5'- -aGUGUGCACcgcaGCGCaggGGGGACCGc- -3' miRNA: 3'- agUACAUGUGca--CGCG---CUCCUGGCac -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 23102 | 0.66 | 0.944607 |
Target: 5'- aCGUGU-CAUGUGUGCGu---CCGUGa -3' miRNA: 3'- aGUACAuGUGCACGCGCuccuGGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 94202 | 0.66 | 0.929932 |
Target: 5'- uUCGUGUcGCACGUgGC-CGAGGAUgGg- -3' miRNA: 3'- -AGUACA-UGUGCA-CGcGCUCCUGgCac -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 89626 | 0.66 | 0.929932 |
Target: 5'- cUAUGUGCAC--GCGUGAGGGauGUGu -3' miRNA: 3'- aGUACAUGUGcaCGCGCUCCUggCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 132651 | 0.67 | 0.918344 |
Target: 5'- cUCAUGUauauGCGCGUucgguuuauccacGCGCGuGGcuCCGUGc -3' miRNA: 3'- -AGUACA----UGUGCA-------------CGCGCuCCu-GGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 17097 | 0.67 | 0.918344 |
Target: 5'- cUCAUGUauauGCGCGUucgguuuauccacGCGCGuGGcuCCGUGc -3' miRNA: 3'- -AGUACA----UGUGCA-------------CGCGCuCCu-GGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 45881 | 0.68 | 0.865247 |
Target: 5'- -gAUGUGCGgGcUGCGCGAGGcgGCCa-- -3' miRNA: 3'- agUACAUGUgC-ACGCGCUCC--UGGcac -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 7610 | 0.68 | 0.865247 |
Target: 5'- gUCAUGUACGCG-GgGaGAGGAguccguCCGUGc -3' miRNA: 3'- -AGUACAUGUGCaCgCgCUCCU------GGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 123164 | 0.68 | 0.865247 |
Target: 5'- gUCAUGUACGCG-GgGaGAGGAguccguCCGUGc -3' miRNA: 3'- -AGUACAUGUGCaCgCgCUCCU------GGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 71034 | 0.69 | 0.806953 |
Target: 5'- gCGUGUACAgCGaGgGCGAuGGACCGg- -3' miRNA: 3'- aGUACAUGU-GCaCgCGCU-CCUGGCac -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 37530 | 0.7 | 0.769877 |
Target: 5'- --uUGcGCAUGUGCGCGGGGAUgGa- -3' miRNA: 3'- aguACaUGUGCACGCGCUCCUGgCac -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 32751 | 0.71 | 0.73078 |
Target: 5'- -----cAUACGUGCGCGGGGGggUCGUGa -3' miRNA: 3'- aguacaUGUGCACGCGCUCCU--GGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 59532 | 0.74 | 0.535762 |
Target: 5'- cUCGUGUACGCGgugGcCG-GAGaGACCGUGg -3' miRNA: 3'- -AGUACAUGUGCa--C-GCgCUC-CUGGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 43693 | 0.78 | 0.345635 |
Target: 5'- cUCA---ACAUGUGCGCGAGGGCgGUGu -3' miRNA: 3'- -AGUacaUGUGCACGCGCUCCUGgCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 14422 | 1.1 | 0.003482 |
Target: 5'- aUCAUGUACACGUGCGCGAGGACCGUGa -3' miRNA: 3'- -AGUACAUGUGCACGCGCUCCUGGCAC- -5' |
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3037 | 3' | -54.3 | NC_001493.1 | + | 129976 | 1.1 | 0.003482 |
Target: 5'- aUCAUGUACACGUGCGCGAGGACCGUGa -3' miRNA: 3'- -AGUACAUGUGCACGCGCUCCUGGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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