Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3037 | 5' | -62.6 | NC_001493.1 | + | 44078 | 0.66 | 0.617062 |
Target: 5'- uGCGCgCCGCGUCCAUgaaCGCgaagCGCaCCg -3' miRNA: 3'- cCGUG-GGCGCGGGUAg--GUGa---GCGgGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 111502 | 0.66 | 0.617062 |
Target: 5'- gGGCACUCGCGCCCGgugucggUCACUgGgaCa -3' miRNA: 3'- -CCGUGGGCGCGGGUa------GGUGAgCggGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 3045 | 0.66 | 0.607282 |
Target: 5'- uGGCAUCCuCGaCCuCGUCCGggucCUCGUCCg -3' miRNA: 3'- -CCGUGGGcGC-GG-GUAGGU----GAGCGGGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 133772 | 0.66 | 0.607282 |
Target: 5'- cGGCACCCagGCcCCCGaCCGCccgggcgUGCCCa -3' miRNA: 3'- -CCGUGGG--CGcGGGUaGGUGa------GCGGGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 102200 | 0.66 | 0.607282 |
Target: 5'- cGCGCUCGCGgggaCCAUCUcaUCGCUCUc -3' miRNA: 3'- cCGUGGGCGCg---GGUAGGugAGCGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 42330 | 0.66 | 0.607282 |
Target: 5'- cGCGCCaCGCG-CCGUCCGau--CCCCg -3' miRNA: 3'- cCGUGG-GCGCgGGUAGGUgagcGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 36393 | 0.66 | 0.607282 |
Target: 5'- cGCaACCCGC-CCCAcugagcacccCCGCgcaggcCGCCCCg -3' miRNA: 3'- cCG-UGGGCGcGGGUa---------GGUGa-----GCGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 123428 | 0.66 | 0.607282 |
Target: 5'- gGGCgACCgGUGUCCAUCC-CUCaccgaGUCUCg -3' miRNA: 3'- -CCG-UGGgCGCGGGUAGGuGAG-----CGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 118600 | 0.66 | 0.607282 |
Target: 5'- uGGCAUCCuCGaCCuCGUCCGggucCUCGUCCg -3' miRNA: 3'- -CCGUGGGcGC-GG-GUAGGU----GAGCGGGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 83875 | 0.66 | 0.607282 |
Target: 5'- aGGUGgCCGUGUUCGUCCggcGCgcggCGCUCCc -3' miRNA: 3'- -CCGUgGGCGCGGGUAGG---UGa---GCGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 7874 | 0.66 | 0.607282 |
Target: 5'- gGGCgACCgGUGUCCAUCC-CUCaccgaGUCUCg -3' miRNA: 3'- -CCG-UGGgCGCGGGUAGGuGAG-----CGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 91600 | 0.66 | 0.607282 |
Target: 5'- cGGCACagGUuCCUAUCUgcagACUCGUCCCc -3' miRNA: 3'- -CCGUGggCGcGGGUAGG----UGAGCGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 18218 | 0.66 | 0.607282 |
Target: 5'- cGGCACCCagGCcCCCGaCCGCccgggcgUGCCCa -3' miRNA: 3'- -CCGUGGG--CGcGGGUaGGUGa------GCGGGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 111669 | 0.66 | 0.59752 |
Target: 5'- cGUACCCGCGagcaCCAgccCCGgUCGUCUg -3' miRNA: 3'- cCGUGGGCGCg---GGUa--GGUgAGCGGGg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 32762 | 0.66 | 0.59752 |
Target: 5'- uGGC-CCCGgaccguaaaCGCCCGUCCcGgUCGCgaCCg -3' miRNA: 3'- -CCGuGGGC---------GCGGGUAGG-UgAGCGg-GG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 59892 | 0.66 | 0.58778 |
Target: 5'- uGCGCcgCCGUGCUCGU-CAC-CGUCCCa -3' miRNA: 3'- cCGUG--GGCGCGGGUAgGUGaGCGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 47939 | 0.66 | 0.585836 |
Target: 5'- cGGagaGCCCGUGCCCcgugaaccucgugGUCCGCaCGCauagguacgagaaCCCg -3' miRNA: 3'- -CCg--UGGGCGCGGG-------------UAGGUGaGCG-------------GGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 106007 | 0.66 | 0.578071 |
Target: 5'- gGGCACCUGCcCCCAccguUCCuuCUcCGCCa- -3' miRNA: 3'- -CCGUGGGCGcGGGU----AGGu-GA-GCGGgg -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 97601 | 0.67 | 0.568396 |
Target: 5'- cGGUAUgaUGUGCCCAugcUCCGCaguguUCuGCCCCa -3' miRNA: 3'- -CCGUGg-GCGCGGGU---AGGUG-----AG-CGGGG- -5' |
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3037 | 5' | -62.6 | NC_001493.1 | + | 27984 | 0.67 | 0.568396 |
Target: 5'- cGGCACCCGaaCCCGUaucCCAgUuacCGCCgCCa -3' miRNA: 3'- -CCGUGGGCgcGGGUA---GGUgA---GCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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