miRNA display CGI


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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30394 5' -60.9 NC_006459.1 + 162 0.71 0.001219
Target:  5'- cCGCUCGAgcguaaugaagaccuGUaagnGGUCCGCUCUGGa-GCCu -3'
miRNA:   3'- -GCGAGCU---------------CG----CCAGGUGAGACCgcCGG- -5'
30394 5' -60.9 NC_006459.1 + 248 0.76 0.000366
Target:  5'- uGCUUGGuGUGGUCCugUn-GGUGGCCc -3'
miRNA:   3'- gCGAGCU-CGCCAGGugAgaCCGCCGG- -5'
30394 5' -60.9 NC_006459.1 + 173 1.11 0
Target:  5'- aCGCUCGAGCGGUCCACUCUGGCGGCCu -3'
miRNA:   3'- -GCGAGCUCGCCAGGUGAGACCGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.