miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30405 5' -52.7 NC_006548.1 + 1141 0.66 0.760695
Target:  5'- aGCGAUGCUGAgcugcgcCGgcuGGGUcgucgacauGGCAuGGAGg -3'
miRNA:   3'- -CGCUACGACU-------GCau-UUCG---------CCGU-CCUC- -5'
30405 5' -52.7 NC_006548.1 + 1504 1.12 0.000645
Target:  5'- cGCGAUGCUGACGUAAAGCGGCAGGAGg -3'
miRNA:   3'- -CGCUACGACUGCAUUUCGCCGUCCUC- -5'
30405 5' -52.7 NC_006548.1 + 4044 0.74 0.28784
Target:  5'- -gGAUGUUGACGccauGAGCGaGCAGGAc -3'
miRNA:   3'- cgCUACGACUGCau--UUCGC-CGUCCUc -5'
30405 5' -52.7 NC_006548.1 + 13743 0.7 0.51326
Target:  5'- cGCGcgGCcugcucgaUGGCGUccAGcCGGUAGGAGa -3'
miRNA:   3'- -CGCuaCG--------ACUGCAuuUC-GCCGUCCUC- -5'
30405 5' -52.7 NC_006548.1 + 15477 0.7 0.535404
Target:  5'- gGCGGgcugUGCUGACGaGGAGUcuuuccaGCAGGAGu -3'
miRNA:   3'- -CGCU----ACGACUGCaUUUCGc------CGUCCUC- -5'
30405 5' -52.7 NC_006548.1 + 22745 0.67 0.683996
Target:  5'- gGCGAUGaagUGGCcaGUcccGAAGCGGC-GGAGu -3'
miRNA:   3'- -CGCUACg--ACUG--CA---UUUCGCCGuCCUC- -5'
30405 5' -52.7 NC_006548.1 + 27632 0.67 0.672565
Target:  5'- aCGggGUcGGCGgcgAAGGCgaGGCAGGAGu -3'
miRNA:   3'- cGCuaCGaCUGCa--UUUCG--CCGUCCUC- -5'
30405 5' -52.7 NC_006548.1 + 28352 0.67 0.661092
Target:  5'- cCGGUGaUGACGUAccGCGGUuGGAc -3'
miRNA:   3'- cGCUACgACUGCAUuuCGCCGuCCUc -5'
30405 5' -52.7 NC_006548.1 + 30681 0.69 0.580604
Target:  5'- uGCGAcgGCgGAC--AGGGUGGCAGGAu -3'
miRNA:   3'- -CGCUa-CGaCUGcaUUUCGCCGUCCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.