Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 23367 | 0.69 | 0.545885 |
Target: 5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3' miRNA: 3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 18611 | 0.69 | 0.566666 |
Target: 5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3' miRNA: 3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 25041 | 0.69 | 0.535045 |
Target: 5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3' miRNA: 3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 32471 | 0.69 | 0.535045 |
Target: 5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3' miRNA: 3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 18568 | 0.69 | 0.535045 |
Target: 5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3' miRNA: 3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 15756 | 0.7 | 0.492518 |
Target: 5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3' miRNA: 3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 11073 | 0.7 | 0.524281 |
Target: 5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3' miRNA: 3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 22080 | 0.71 | 0.451614 |
Target: 5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3' miRNA: 3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 6981 | 0.71 | 0.441679 |
Target: 5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3' miRNA: 3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 35712 | 0.71 | 0.422189 |
Target: 5'- cGUGaCGACuACGACGUCGC-GACGCu -3' miRNA: 3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 22551 | 0.71 | 0.421228 |
Target: 5'- cGGCGgaggagagccugaUCGACGGcCAAC-UgGCCGGCGUu -3' miRNA: 3'- -CCGC-------------AGCUGCU-GUUGuAgCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 36547 | 0.71 | 0.441679 |
Target: 5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3' miRNA: 3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 2950 | 0.71 | 0.422189 |
Target: 5'- gGGCcaUGGcCGACAACAUCGCCuucGACGa -3' miRNA: 3'- -CCGcaGCU-GCUGUUGUAGCGG---CUGCg -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 27073 | 0.72 | 0.41264 |
Target: 5'- gGGcCGUCugcuGAuCGGCGGacUCGCCGACGCu -3' miRNA: 3'- -CC-GCAG----CU-GCUGUUguAGCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 4259 | 0.72 | 0.393947 |
Target: 5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3' miRNA: 3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 32943 | 0.72 | 0.393947 |
Target: 5'- cGCGUCGGCGAuuCAACuggcgCGCCcggugcagcGGCGCu -3' miRNA: 3'- cCGCAGCUGCU--GUUGua---GCGG---------CUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 35964 | 0.73 | 0.35825 |
Target: 5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3' miRNA: 3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 18142 | 0.73 | 0.34127 |
Target: 5'- cGCGggGAuguuCGACGGCAUCGCUGugGUu -3' miRNA: 3'- cCGCagCU----GCUGUUGUAGCGGCugCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 20561 | 0.73 | 0.35825 |
Target: 5'- cGGCGUCGACGccuucuauuGCGGguUCGgagaaCGACGCc -3' miRNA: 3'- -CCGCAGCUGC---------UGUUguAGCg----GCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 36642 | 0.73 | 0.366959 |
Target: 5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3' miRNA: 3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home