miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30406 3' -53.9 NC_006548.1 + 28290 0.66 0.754613
Target:  5'- gGGCGUCGucaACGuCAccaaguuCGUCGCggaggagauugCGGCGCg -3'
miRNA:   3'- -CCGCAGC---UGCuGUu------GUAGCG-----------GCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 35900 0.66 0.754613
Target:  5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3'
miRNA:   3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 3435 0.66 0.754613
Target:  5'- cGCGUCacccuguGCGAgGAgCAgCGCCGugGCc -3'
miRNA:   3'- cCGCAGc------UGCUgUU-GUaGCGGCugCG- -5'
30406 3' -53.9 NC_006548.1 + 37669 0.66 0.755658
Target:  5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3'
miRNA:   3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5'
30406 3' -53.9 NC_006548.1 + 4471 0.66 0.765006
Target:  5'- cGGUgcauGUCGGCGAaccgcuCGUCacuGCCGAUGUg -3'
miRNA:   3'- -CCG----CAGCUGCUguu---GUAG---CGGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 12255 0.66 0.765006
Target:  5'- cGGCGcCGACaguccccacuCAGCAUgCGCCGcucgaaccagcACGCg -3'
miRNA:   3'- -CCGCaGCUGcu--------GUUGUA-GCGGC-----------UGCG- -5'
30406 3' -53.9 NC_006548.1 + 15469 0.66 0.765006
Target:  5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3'
miRNA:   3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5'
30406 3' -53.9 NC_006548.1 + 21502 0.66 0.765006
Target:  5'- gGGCGauguaGACGGaccCGAUAUCaccCCGACGCc -3'
miRNA:   3'- -CCGCag---CUGCU---GUUGUAGc--GGCUGCG- -5'
30406 3' -53.9 NC_006548.1 + 25340 0.66 0.765006
Target:  5'- --gGUgGGCGGCAAgGaCGCCGAUGa -3'
miRNA:   3'- ccgCAgCUGCUGUUgUaGCGGCUGCg -5'
30406 3' -53.9 NC_006548.1 + 4124 0.66 0.765006
Target:  5'- cGGCGUCGAUGugGGC-UgGaCGACc- -3'
miRNA:   3'- -CCGCAGCUGCugUUGuAgCgGCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.