Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 35712 | 0.71 | 0.422189 |
Target: 5'- cGUGaCGACuACGACGUCGC-GACGCu -3' miRNA: 3'- cCGCaGCUGcUGUUGUAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35878 | 0.69 | 0.566666 |
Target: 5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3' miRNA: 3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35900 | 0.66 | 0.754613 |
Target: 5'- cGGCGUgauaaCGACGACGAaggagUAUCGggccuaccgaCCGGCGa -3' miRNA: 3'- -CCGCA-----GCUGCUGUU-----GUAGC----------GGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35964 | 0.73 | 0.35825 |
Target: 5'- cGGCGcgCGACuGCAACGU-GUCGACGUc -3' miRNA: 3'- -CCGCa-GCUGcUGUUGUAgCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36547 | 0.71 | 0.441679 |
Target: 5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3' miRNA: 3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36623 | 0.67 | 0.667843 |
Target: 5'- uGCGUCGAU-ACGgugccagcgccGCAUgagGCCGGCGCg -3' miRNA: 3'- cCGCAGCUGcUGU-----------UGUAg--CGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36642 | 0.73 | 0.366959 |
Target: 5'- cGGUGcCGGCcGCGGCGUugaucgCGUCGACGCg -3' miRNA: 3'- -CCGCaGCUGcUGUUGUA------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36828 | 0.68 | 0.650035 |
Target: 5'- --aGUCGAcCGGCGcgaggcucucugcgaGCGUCGCCGA-GCu -3' miRNA: 3'- ccgCAGCU-GCUGU---------------UGUAGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36855 | 0.66 | 0.748314 |
Target: 5'- uGGCGUaucCGACGAagaccuacggugugcUGACcguGUCGUgGGCGCa -3' miRNA: 3'- -CCGCA---GCUGCU---------------GUUG---UAGCGgCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 37669 | 0.66 | 0.755658 |
Target: 5'- aGGuCGUCGACucggguggauguauCGACGUCGCUGcaucgaacACGCu -3' miRNA: 3'- -CC-GCAGCUGcu------------GUUGUAGCGGC--------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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