Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 15756 | 0.7 | 0.492518 |
Target: 5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3' miRNA: 3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 15469 | 0.66 | 0.765006 |
Target: 5'- -uCGUCGGcCGGCAGCAUCuGCUG-CaGCu -3' miRNA: 3'- ccGCAGCU-GCUGUUGUAG-CGGCuG-CG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 15115 | 0.68 | 0.600969 |
Target: 5'- -aCGUCGAUGACGAUcUCGCCcagauccuuGGCGg -3' miRNA: 3'- ccGCAGCUGCUGUUGuAGCGG---------CUGCg -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 14651 | 0.66 | 0.710786 |
Target: 5'- cGCGUCaGCGucGCGAUGUucuuugcCGCUGACGCc -3' miRNA: 3'- cCGCAGcUGC--UGUUGUA-------GCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 14578 | 0.81 | 0.11337 |
Target: 5'- uGGCGUCaGCGGCAaagaACAUCGC-GACGCu -3' miRNA: 3'- -CCGCAGcUGCUGU----UGUAGCGgCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 14450 | 0.66 | 0.744091 |
Target: 5'- cGGCGaCGACcugGACGcacGCAgcgaggCGCUGACGg -3' miRNA: 3'- -CCGCaGCUG---CUGU---UGUa-----GCGGCUGCg -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 13428 | 0.67 | 0.655607 |
Target: 5'- cGGCGUCaGAacCGGCGGCGggccaggUCGCUGuuugaGCGCc -3' miRNA: 3'- -CCGCAG-CU--GCUGUUGU-------AGCGGC-----UGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 13280 | 0.66 | 0.744091 |
Target: 5'- gGGUGcgCGACuuCAACAcCGCCcucGGCGCc -3' miRNA: 3'- -CCGCa-GCUGcuGUUGUaGCGG---CUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 12255 | 0.66 | 0.765006 |
Target: 5'- cGGCGcCGACaguccccacuCAGCAUgCGCCGcucgaaccagcACGCg -3' miRNA: 3'- -CCGCaGCUGcu--------GUUGUA-GCGGC-----------UGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 11073 | 0.7 | 0.524281 |
Target: 5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3' miRNA: 3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 9625 | 0.68 | 0.62214 |
Target: 5'- cGCGUgcgccccUGGCGAUaccucgGACAUCuccuggcaccugGCCGACGCg -3' miRNA: 3'- cCGCA-------GCUGCUG------UUGUAG------------CGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 8533 | 0.66 | 0.72271 |
Target: 5'- cGCGcagGACGcGCAGCGcgguuUCGuuGACGCg -3' miRNA: 3'- cCGCag-CUGC-UGUUGU-----AGCggCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 8188 | 0.66 | 0.754613 |
Target: 5'- uGGCGcaguUCGGCGACGGCcUCccuuaCGACcGCa -3' miRNA: 3'- -CCGC----AGCUGCUGUUGuAGcg---GCUG-CG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 7845 | 0.69 | 0.545885 |
Target: 5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3' miRNA: 3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 6981 | 0.71 | 0.441679 |
Target: 5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3' miRNA: 3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 5310 | 0.67 | 0.667843 |
Target: 5'- aGCcUCGGCGuuGGCG-CGCCGGgGCu -3' miRNA: 3'- cCGcAGCUGCugUUGUaGCGGCUgCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 5112 | 0.69 | 0.578791 |
Target: 5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3' miRNA: 3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 4471 | 0.66 | 0.765006 |
Target: 5'- cGGUgcauGUCGGCGAaccgcuCGUCacuGCCGAUGUg -3' miRNA: 3'- -CCG----CAGCUGCUguu---GUAG---CGGCUGCG- -5' |
|||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 4259 | 0.72 | 0.393947 |
Target: 5'- uGGCGUuguUGACGGCAuccagGCAUCGggccagcuCCGGCGUc -3' miRNA: 3'- -CCGCA---GCUGCUGU-----UGUAGC--------GGCUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home